View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18620_low_2 (Length: 793)
Name: NF18620_low_2
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18620_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 700; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 9 - 775
Target Start/End: Original strand, 17693240 - 17694007
Alignment:
| Q |
9 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
108 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17693240 |
atggacatcaccaaaccataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattataaccttctcgtgttgcaaat |
17693339 |
T |
|
| Q |
109 |
agatggagattcgccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
208 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693340 |
agatggagattcaccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
17693439 |
T |
|
| Q |
209 |
tattatgtaccttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaacttagaagatgcccaggttggcaaattagaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17693440 |
tattatgtaccttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaa |
17693539 |
T |
|
| Q |
309 |
gaaaaatgtgtcatcacttgtggcaacttcagaccctttttcctcaattctcttgnnnnnnnnaaccacttgtgttatgccttgtcttcaagttccaaca |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
17693540 |
gaaaaatgtgtcatcacttgtggcaacttcagaccctttttcctcaattctcttgttttttttaaccacttttgttatgccttgtcttcaagttccaaca |
17693639 |
T |
|
| Q |
409 |
taacagcaaacaactttttactgccatgaatttatatgaagttcaagttgttgtgagttgtgacatttgtaatgttgacataatgaaacaaatggtgtca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
17693640 |
taacagcaaacaactttttactgccatgaatttatatgaagttcaagttgttgtgagttgtgacatttgtaatgttgacataatgaaacatatggtatca |
17693739 |
T |
|
| Q |
509 |
aatatcaatgaaatctttgttatgattctgatatgtcattcattagatacatagaaattatttttaccagaggtaaacctactcattgttcatgtgctta |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693740 |
aatatcaatgaaatctttgttatgattctgatatgtcattcattagatacatagaaattatttttaccagaggtaaacctactcattgttcatgtgctta |
17693839 |
T |
|
| Q |
609 |
cgaaaatatttggtattaagtagctttgatgcaatcaaaacaaataaattggaggcataaatttataagaactagatacttgtaatgttgctcattggta |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693840 |
cgaaaatatttggtattaagtagctttgatgcaatcaaaacaaataaattggaggcataaatttataagaactagatacttgtaatgttgctcattggta |
17693939 |
T |
|
| Q |
709 |
ttaactagatact-agccgagtgctgctaactatgaaggcacaaatttcaaaattacttggatattct |
775 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693940 |
ttaactagatactaacccgagtgctgctaactatgaaggcacaaatttcaaaattacttggatattct |
17694007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 9 - 775
Target Start/End: Original strand, 17613507 - 17614288
Alignment:
| Q |
9 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
108 |
Q |
| |
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|||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17613507 |
atgggcatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
17613606 |
T |
|
| Q |
109 |
agatggagattcgccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
208 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||| |||||||||||| |||||||| |
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| T |
17613607 |
aggtggagattcaccttcttcgatgatggtgtctttacgccttaatttcagtgctaacggacatatatcacgcagaacctagtgtacagggattgatatc |
17613706 |
T |
|
| Q |
209 |
tat-tatgtaccttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaacttagaagatgcccaggttggcaaattaga |
307 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
17613707 |
tatgtatgtaccttgaggaaagattcacttgttgtgatatatattttgaagccatgttgaatgtttgtaaattagaagatgcccaggttggccaattaga |
17613806 |
T |
|
| Q |
308 |
agaaaaatgtgtcatcacttgtggcaacttcagacccttttt-cctcaattctct-tgnnnnnnnnaaccacttgtgttatgccttgtcttcaag----- |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||| ||| ||||||||||| |||||||| |
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|
| T |
17613807 |
agaaaaatgtgtcatcacttgtggcaacttctgacccttttttcctcaattctctctcttttttttaaccccttttgttatgccttctcttcaagctcct |
17613906 |
T |
|
| Q |
401 |
-------ttccaacataacagcaaacaactttttactgccatgaatttatatgaagttcaagttgttgtgagttgtgacatttgtaatgttgacataatg |
493 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
17613907 |
attgtacttccatcataatagcaaataactttttactgctatcaatttagatgaagttcaagttgttgtgacttgtgacatttgtaatgttgacataatg |
17614006 |
T |
|
| Q |
494 |
aaacaaatggtgtcaaatatcaatgaaatctttgttatgattctgatatgtcattcattagatacatagaaattatttttaccagaggtaaacctactca |
593 |
Q |
| |
|
||| ||||| | ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
17614007 |
aaaaaaatgatatcaaatatcaatggaaactttgttatgattctgatatgtcattcattagatacat-gaaattatttttactagaggtaaacctgctca |
17614105 |
T |
|
| Q |
594 |
ttgttcatgtgcttacgaaaatatttggtattaagtagctttgatgcaatcaaaacaaataaattggaggcataaatttataagaactagatacttgtaa |
693 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
17614106 |
ttgttcatgtgcttatgaaaatatttggcattaagtagctttgatgcaatcaaaaaaaaaaaattggaggcataaatttataaggactagatacttgtaa |
17614205 |
T |
|
| Q |
694 |
tgttgctcattggtattaactagatactagcc-gagtgctgctaactatgaaggcacaaatttcaaaattacttggatattct |
775 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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|
| T |
17614206 |
tgttgctcattggtattaactagatactaacctgagtgctgctaactatgaaggcagaaatttaaaaataacttggatattct |
17614288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 17671088 - 17671324
Alignment:
| Q |
9 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17671088 |
atggacatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
17671187 |
T |
|
| Q |
109 |
agatggagattcgccttcttcgatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatc |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||| |||||||||||| |||||||| |
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|
| T |
17671188 |
agatggagattcaccttcttcgatgatggtgtcttttcgccttagtttcagtgctaacggacatctatcatgcagaacctagtgtacagggattgatatc |
17671287 |
T |
|
| Q |
209 |
tat-tatgtac--cttgaggaaaggttcacttgttgt |
242 |
Q |
| |
|
||| ||||||| ||||| ||| |||||||||||||| |
|
|
| T |
17671288 |
tatgtatgtaccacttgatgaatggttcacttgttgt |
17671324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 401 - 608
Target Start/End: Original strand, 17671517 - 17671723
Alignment:
| Q |
401 |
ttccaacataacagcaaacaactttttactgccatgaatttatatgaagttcaagttgttgtgagttgtgacatttgtaatgttgacataatgaaacaaa |
500 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
17671517 |
ttccatcataatagcaaataactttttactgctatcaatttagatgaagttcaagttgttgtgacttgtgacatttgtaatgttgacataatgaaaaaaa |
17671616 |
T |
|
| Q |
501 |
tggtgtcaaatatcaatgaaatctttgttatgattctgatatgtcattcattagatacatagaaattatttttaccagaggtaaacctactcattgttca |
600 |
Q |
| |
|
|| | ||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| || |
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|
| T |
17671617 |
tgatatcaaatatcaatggaaactttgttatgattctgatatgtcattcattagatgcat-gaaattatttttactagaggtaaacctgttcattgtgca |
17671715 |
T |
|
| Q |
601 |
tgtgctta |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
17671716 |
tgtgctta |
17671723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 17626692 - 17626844
Alignment:
| Q |
9 |
atggacatcatcaaagcataggtggttgcaccttatggtgcttgtgatgagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17626692 |
atggacatcaccaaagcataggtggttgcaccctatggtgcttgtgaagagtgacctaaccttattgtaatgtacattatgaccttctcgtgttgcaaat |
17626791 |
T |
|
| Q |
109 |
agatggagattcgccttcttcgatgatggtgtctttatgccttaatttcagtg |
161 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
17626792 |
agatggagattcaccttcttcgatgatggtgtcttttcgccttagtttcagtg |
17626844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 17671327 - 17671421
Alignment:
| Q |
268 |
atgtttgtaacttagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcacttgtggcaacttcagaccc-tttttcctcaattctct |
361 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17671327 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcacttgtggcaacttctgacccttttttcctcaattctct |
17671421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 17657819 - 17657913
Alignment:
| Q |
268 |
atgtttgtaacttagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcacttgtggcaacttcagaccct-ttttcctcaattctct |
361 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
17657819 |
atgtttgtaaattagaagatgctcaggtttgcaaattagaagaaaaatgtgtcatcacttgtggcaacttctgaccctattttcctcaattctct |
17657913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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