View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18620_low_6 (Length: 510)

Name: NF18620_low_6
Description: NF18620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18620_low_6
NF18620_low_6
[»] chr6 (21 HSPs)
chr6 (88-487)||(1693768-1694175)
chr6 (24-81)||(17841631-17841688)
chr6 (24-78)||(28152062-28152116)
chr6 (24-79)||(17302518-17302573)
chr6 (24-61)||(3398599-3398636)
chr6 (24-61)||(12696304-12696341)
chr6 (24-79)||(10842494-10842549)
chr6 (25-79)||(17435162-17435215)
chr6 (49-79)||(34225886-34225916)
chr6 (24-61)||(426556-426593)
chr6 (51-80)||(7938059-7938088)
chr6 (24-61)||(7938096-7938133)
chr6 (24-61)||(8365561-8365598)
chr6 (24-61)||(8777015-8777052)
chr6 (24-61)||(9027158-9027195)
chr6 (24-61)||(9107412-9107449)
chr6 (24-80)||(10770716-10770777)
chr6 (24-61)||(16766677-16766714)
chr6 (25-61)||(9658859-9658895)
chr6 (51-79)||(18367781-18367809)
chr6 (24-64)||(19147445-19147485)
[»] chr2 (20 HSPs)
chr2 (24-80)||(37558938-37558994)
chr2 (24-81)||(18841055-18841117)
chr2 (25-61)||(6940235-6940271)
chr2 (24-79)||(37419704-37419760)
chr2 (24-79)||(19580323-19580378)
chr2 (24-63)||(21374741-21374780)
chr2 (25-60)||(24894370-24894405)
chr2 (50-81)||(27084228-27084259)
chr2 (24-79)||(39323226-39323281)
chr2 (24-61)||(12940977-12941014)
chr2 (24-61)||(14996266-14996303)
chr2 (24-61)||(20539716-20539753)
chr2 (51-80)||(26769460-26769489)
chr2 (51-80)||(27447088-27447117)
chr2 (38-79)||(41843403-41843444)
chr2 (50-79)||(44770206-44770235)
chr2 (51-79)||(21374781-21374809)
chr2 (25-61)||(21624246-21624282)
chr2 (24-56)||(27460011-27460043)
chr2 (24-79)||(30404892-30404952)
[»] chr1 (20 HSPs)
chr1 (24-78)||(46348425-46348479)
chr1 (24-74)||(18556498-18556548)
chr1 (24-61)||(1486751-1486788)
chr1 (24-80)||(14359563-14359624)
chr1 (24-60)||(42359491-42359527)
chr1 (24-79)||(6427313-6427367)
chr1 (24-78)||(6427425-6427478)
chr1 (24-61)||(398807-398844)
chr1 (24-61)||(5927382-5927419)
chr1 (24-61)||(40917731-40917768)
chr1 (24-61)||(48040504-48040541)
chr1 (24-80)||(48450629-48450690)
chr1 (51-80)||(48548049-48548078)
chr1 (24-60)||(2896163-2896199)
chr1 (51-79)||(10577822-10577850)
chr1 (51-79)||(25934572-25934600)
chr1 (24-64)||(29144400-29144440)
chr1 (24-79)||(37598793-37598849)
chr1 (51-79)||(38078743-38078771)
chr1 (51-79)||(51409981-51410009)
[»] chr8 (12 HSPs)
chr8 (24-81)||(36450796-36450853)
chr8 (24-79)||(31109560-31109615)
chr8 (25-78)||(22204603-22204655)
chr8 (24-61)||(22651956-22651993)
chr8 (24-61)||(29510346-29510383)
chr8 (45-79)||(5137484-5137518)
chr8 (24-58)||(25192389-25192423)
chr8 (24-61)||(13437006-13437043)
chr8 (51-79)||(3951616-3951644)
chr8 (24-64)||(5813569-5813609)
chr8 (51-79)||(20785546-20785574)
chr8 (51-79)||(24413647-24413675)
[»] chr5 (17 HSPs)
chr5 (24-79)||(14674231-14674286)
chr5 (24-79)||(43001762-43001817)
chr5 (24-64)||(39698518-39698558)
chr5 (24-61)||(22013394-22013431)
chr5 (24-80)||(6035444-6035500)
chr5 (25-61)||(21522730-21522766)
chr5 (25-61)||(21533296-21533332)
chr5 (24-76)||(3966467-3966520)
chr5 (51-80)||(15382420-15382449)
chr5 (24-61)||(15382457-15382494)
chr5 (24-61)||(19552585-19552622)
chr5 (24-61)||(21191098-21191135)
chr5 (24-61)||(36642804-36642841)
chr5 (25-61)||(6770523-6770559)
chr5 (25-61)||(15410491-15410527)
chr5 (24-60)||(19579682-19579718)
chr5 (49-77)||(41995417-41995445)
[»] chr4 (11 HSPs)
chr4 (24-77)||(30298910-30298963)
chr4 (24-77)||(30327778-30327831)
chr4 (24-78)||(12895158-12895211)
chr4 (25-80)||(24543941-24543997)
chr4 (51-80)||(22234954-22234983)
chr4 (24-61)||(23293028-23293065)
chr4 (51-79)||(4157102-4157130)
chr4 (27-79)||(7970483-7970535)
chr4 (51-79)||(20633429-20633457)
chr4 (24-77)||(35723427-35723484)
chr4 (24-79)||(49430982-49431042)
[»] chr3 (22 HSPs)
chr3 (24-79)||(40052295-40052349)
chr3 (24-79)||(33359722-33359778)
chr3 (24-64)||(10318076-10318116)
chr3 (24-78)||(20503429-20503482)
chr3 (24-61)||(3865598-3865635)
chr3 (24-79)||(26508067-26508127)
chr3 (24-75)||(6525722-6525773)
chr3 (24-79)||(37077320-37077375)
chr3 (45-79)||(13845580-13845614)
chr3 (51-80)||(750706-750735)
chr3 (37-78)||(1852600-1852641)
chr3 (24-61)||(10335328-10335365)
chr3 (24-61)||(14829670-14829707)
chr3 (24-80)||(14979137-14979198)
chr3 (26-79)||(22774114-22774167)
chr3 (24-61)||(26492247-26492284)
chr3 (51-79)||(14027959-14027987)
chr3 (24-64)||(21720741-21720781)
chr3 (51-79)||(23870622-23870650)
chr3 (24-79)||(28812477-28812532)
chr3 (24-79)||(34910279-34910334)
chr3 (51-79)||(45451523-45451551)
[»] chr7 (16 HSPs)
chr7 (26-80)||(15680770-15680824)
chr7 (25-79)||(7197340-7197394)
chr7 (24-78)||(25791616-25791670)
chr7 (24-80)||(18215228-18215284)
chr7 (24-59)||(12010022-12010057)
chr7 (24-61)||(24105658-24105695)
chr7 (24-80)||(11072259-11072315)
chr7 (24-80)||(26019673-26019729)
chr7 (24-80)||(32308081-32308137)
chr7 (24-77)||(11665482-11665536)
chr7 (45-79)||(19213773-19213807)
chr7 (24-61)||(5409878-5409915)
chr7 (24-61)||(11061118-11061155)
chr7 (25-78)||(37742486-37742539)
chr7 (51-79)||(9778452-9778480)
chr7 (25-61)||(13770671-13770707)
[»] scaffold0103 (1 HSPs)
scaffold0103 (24-68)||(51784-51828)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-61)||(8778-8815)
[»] scaffold0003 (1 HSPs)
scaffold0003 (24-61)||(241574-241611)
[»] scaffold0306 (1 HSPs)
scaffold0306 (24-61)||(13380-13417)
[»] scaffold0223 (1 HSPs)
scaffold0223 (24-61)||(20152-20189)
[»] scaffold0152 (1 HSPs)
scaffold0152 (24-61)||(21910-21947)
[»] scaffold0116 (1 HSPs)
scaffold0116 (51-80)||(9841-9870)
[»] scaffold0049 (1 HSPs)
scaffold0049 (51-80)||(63708-63737)
[»] scaffold0025 (1 HSPs)
scaffold0025 (24-80)||(23729-23786)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-79)||(71679-71740)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-61)||(178861-178898)
[»] scaffold0007 (1 HSPs)
scaffold0007 (24-61)||(225310-225347)
[»] scaffold0171 (1 HSPs)
scaffold0171 (51-79)||(23371-23399)
[»] scaffold0086 (1 HSPs)
scaffold0086 (24-64)||(2900-2940)
[»] scaffold0027 (1 HSPs)
scaffold0027 (52-80)||(46625-46653)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-64)||(92784-92824)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 88 - 487
Target Start/End: Complemental strand, 1694175 - 1693768
Alignment:
Q  88 tatagtcaaaagccacgtcgacattggagcttgattttcatcacattatttggaaaagtagtgtataagttttcattcattgaaatataacctaagttca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1694175 tatagtcaaaagccacgtcgacattggagcttgattttcatcacattatttggaaaagtagtgtataagttttcatt-attgaaatataacctaagttca 1694077  T
Q  188 caattgnnnnnnnnnn---------gctctaaaactgcatccgtaaaatcatcagattcaattccatctctttcatctccatctagtaaatgaccagata 278  Q
    ||||||                   ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1694076 caattgaaaaaaaaaaaaaaaaaaagctctaaaactgcatccataaaataatcagattcaattccatctctttcatctccatctagtaaatgaccagata 1693977  T
Q  279 tttctacttcacagcctcaaaaaactacattgtcaatttgaaaatnnnnnnnnccacatgttgggaaaggaaaatatgaagctcataaacaagtgggagt 378  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  1693976 tttctacttcacagactcaaaaaactactttgtcaatttgaaaataaaaaaacccacatgttgggaaaggaaaatatgaagctcataaacaagtgggagt 1693877  T
Q  379 gttctaaaataatgtaaataagataagaatccaaatatgtctctcatctaatgaaacttatagacatattggaaattcatcgtacacataaaatgtagcc 478  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1693876 gttgtaaaataatgtaaataagataagaatccaaatatgtctctcatctaatgaaacttatagacatattggaaattcatcgtacacataaaatgcagcc 1693777  T
Q  479 attctaaat 487  Q
    || ||||||    
T  1693776 atcctaaat 1693768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 17841631 - 17841688
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataggg 81  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  17841631 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcataggg 17841688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 28152116 - 28152062
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  28152116 caaattattagctttgtcggcgtgtcagtgtccgtgtccatatccgtgcttcata 28152062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17302573 - 17302518
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||    
T  17302573 caaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatctgcgcttcatag 17302518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 3398636 - 3398599
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3398636 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 3398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 12696341 - 12696304
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12696341 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 12696304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 10842549 - 10842494
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||| ||||| ||||||| |||||  ||||||| ||||||||||||||    
T  10842549 caaattattagcggtgtcggcgtgtccgtgtcaatgtccgtgtccgtgcttcatag 10842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 17435215 - 17435162
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||| ||||  ||| ||||||||||||| ||||||||||||||||||    
T  17435215 aaattattagctatgtcgacgtatcagtgtccgtgt-cgtatccgtgcttcatag 17435162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 34225886 - 34225916
Alignment:
Q  49 cagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||||    
T  34225886 cagtgtccgtgtccgtatccgtgcttcatag 34225916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 426556 - 426593
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  426556 caaattattaactgtgtcggcgtgtcagtgtccgtgtc 426593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 7938088 - 7938059
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  7938088 gtgtccgtgtccgtatccgtgcttcatagg 7938059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 7938133 - 7938096
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  7938133 caaattattagctgtgtcggcgtgtcagtgtccatgtc 7938096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 8365561 - 8365598
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8365561 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 8365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 8777015 - 8777052
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8777015 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 8777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 9027195 - 9027158
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  9027195 caaattattagcggtgtcggcgtgtcagtgtccgtgtc 9027158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 9107412 - 9107449
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  9107412 caaattattagctgtgtcggcgtgttagtgtccgtgtc 9107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 10770716 - 10770777
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc-----gtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||| |||||  ||||||||||||||     ||||||||||||||||||||||||    
T  10770716 caaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatccgtgcttcatagg 10770777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 16766714 - 16766677
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  16766714 caaattattagctgtgtcggcgtgtcagtgtccatgtc 16766677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 9658895 - 9658859
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtc 9658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 18367809 - 18367781
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  18367809 gtgtccgtgtccgtatccgtgcttcatag 18367781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 19147445 - 19147485
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    |||||||||||||||||| | |||||||||||||| |||||    
T  19147445 caaattattagctgtgtccgtgtgtcagtgtccgtatccgt 19147485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 37558994 - 37558938
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37558994 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 37558938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 18841055 - 18841117
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcataggg 81  Q
    ||||||||||| ||||||||||||||||||||     ||||||||||| ||||||||||||||    
T  18841055 caaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccgtatacgtgcttcataggg 18841117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 6940271 - 6940235
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6940271 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 6940235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 37419760 - 37419704
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatag 79  Q
    ||||||||| ||  |||| ||||||||||||||| ||||||||||||||||||||||    
T  37419760 caaattatttgccatgtcggcgtgtcagtgtccggtgtccgtatccgtgcttcatag 37419704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 19580323 - 19580378
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||| ||||| | | || ||||||||||||||||||||||| ||||||||    
T  19580323 caaattattaactgtgacggtgtatcagtgtccgtgtccgtatccgtacttcatag 19580378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 21374741 - 21374780
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccg 63  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  21374741 caaattattagctgtgtcggcgtgttagtgtccgtgtccg 21374780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 24894405 - 24894370
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgt 60  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24894405 aaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 27084259 - 27084228
Alignment:
Q  50 agtgtccgtgtccgtatccgtgcttcataggg 81  Q
    ||||||||||||||||||||||||||||||||    
T  27084259 agtgtccgtgtccgtatccgtgcttcataggg 27084228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 39323281 - 39323226
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||| |||||  ||| ||||||||||||||||||| ||||||| ||||    
T  39323281 caaattattagcggtgtcgacgtttcagtgtccgtgtccgtattcgtgctttatag 39323226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 12940977 - 12941014
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  12940977 caaattattagttgtgtcaacgtgtcagtgtccgtgtc 12941014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 14996266 - 14996303
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| || ||||||||||||||||    
T  14996266 caaattattagctgtgtcggcttgtcagtgtccgtgtc 14996303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 20539716 - 20539753
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  20539716 caaattattagctgtgtcgacgtgtcagtgtccgtgtc 20539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 26769489 - 26769460
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  26769489 gtgtccgtgtccgtatccgtgcttcatagg 26769460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 27447088 - 27447117
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  27447088 gtgtccgtgtccgtatccgtgcttcatagg 27447117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 41843444 - 41843403
Alignment:
Q  38 tgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||| |||||||||||||||||| | ||||||||||||||||    
T  41843444 tgtcggcgtgtcagtgtccgtgttcatatccgtgcttcatag 41843403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 44770206 - 44770235
Alignment:
Q  50 agtgtccgtgtccgtatccgtgcttcatag 79  Q
    ||||||||||||||||||||||||||||||    
T  44770206 agtgtccgtgtccgtatccgtgcttcatag 44770235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 21374781 - 21374809
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  21374781 gtgtccgtgtccgtatccgtgcttcatag 21374809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 21624282 - 21624246
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 21624246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 27460043 - 27460011
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc 56  Q
    |||||||||||||||||| ||||||||||||||    
T  27460043 caaattattagctgtgtcggcgtgtcagtgtcc 27460011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 30404892 - 30404952
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccg-----tgtccgtatccgtgcttcatag 79  Q
    |||||||||| | ||||| |||||||||||||||     ||||||||||||||||||||||    
T  30404892 caaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcatag 30404952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 46348425 - 46348479
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46348425 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcata 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 18556498 - 18556548
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgctt 74  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18556498 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 18556548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 1486751 - 1486788
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1486751 caaattattagctgtgtcagcgtgtcagtatccgtgtc 1486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 14359563 - 14359624
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||||||||| ||||||| |||||     |||||||||||||||||||||||||    
T  14359563 caaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcatagg 14359624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 42359491 - 42359527
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgt 60  Q
    ||||||||||| |||||||||||||||||||||||||    
T  42359491 caaattattagatgtgtcagcgtgtcagtgtccgtgt 42359527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 6427367 - 6427313
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||    
T  6427367 caaattattagcggtgttggcgtgtcagtgtccgtg-ccgtgtccgtgcttcatag 6427313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 6427478 - 6427425
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||||||||| |||||| || ||||||||| ||||||||||||| |||||||||    
T  6427478 caaattattagttgtgtcggcatgtcagtgt-cgtgtccgtatccatgcttcata 6427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 398807 - 398844
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  398807 caaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 5927382 - 5927419
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  5927382 caaattattagcagtgttagcgtgtcagtgtccgtgtc 5927419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 40917768 - 40917731
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  40917768 caaattattagctgtgtcggcgtgtcagtatccgtgtc 40917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 48040504 - 48040541
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  48040504 caaattattatctgtgtcggcgtgtcagtgtccgtgtc 48040541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 48450629 - 48450690
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtg-----tccgtatccgtgcttcatagg 80  Q
    |||||||||||||||||  |||||||||||||||||     ||||||||| |||||||||||    
T  48450629 caaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccgtatccatgcttcatagg 48450690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 48548049 - 48548078
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  48548049 gtgtccgtgtccgtatccgtgcttcatagg 48548078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 2896163 - 2896199
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgt 60  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  2896163 caaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 10577822 - 10577850
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  10577822 gtgtccgtgtccgtatccgtgcttcatag 10577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 25934600 - 25934572
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  25934600 gtgtccgtgtccgtatccgtgcttcatag 25934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 29144400 - 29144440
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  29144400 caaattattagctgtgtcggcgtatcagtgtcagtgtccgt 29144440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 37598849 - 37598793
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcatag 79  Q
    ||||||||||| |||||| |||||||||||||| ||||| || ||||||| ||||||    
T  37598849 caaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgtgcgtcatag 37598793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 38078743 - 38078771
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  38078743 gtgtccgtgtccgtatccgtgcttcatag 38078771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 51410009 - 51409981
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  51410009 gtgtccgtgtccgtatccgtgcttcatag 51409981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 36450796 - 36450853
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataggg 81  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  36450796 caaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcataggg 36450853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 31109560 - 31109615
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||| | ||||| |||||||||||||||||||| |||| |||||||||||    
T  31109560 caaattattaacggtgtcggcgtgtcagtgtccgtgtccatatcagtgcttcatag 31109615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 22204655 - 22204603
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||    
T  22204655 aaattattagttgtgtcggcgtgtcagtgtccgtatccgtatcc-tgcttcata 22204603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 22651993 - 22651956
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22651993 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 29510346 - 29510383
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  29510346 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 29510383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 5137484 - 5137518
Alignment:
Q  45 gtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    ||||| |||||||||||||||||||||||||||||    
T  5137484 gtgtccgtgtccgtgtccgtatccgtgcttcatag 5137518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 25192389 - 25192423
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgt 58  Q
    |||||||||||||||||| ||||||||||||||||    
T  25192389 caaattattagctgtgtcggcgtgtcagtgtccgt 25192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 13437006 - 13437043
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  13437006 caaattattagctgtgtcggcgtgtcagtgtccatgtc 13437043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 3951616 - 3951644
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  3951616 gtgtccgtgtccgtatccgtgcttcatag 3951644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 5813609 - 5813569
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  5813609 caaattattagctgtgtcggcgtgtccgtgtccgtatccgt 5813569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 20785546 - 20785574
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  20785546 gtgtccgtgtccgtatccgtgcttcatag 20785574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 24413647 - 24413675
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  24413647 gtgtccgtgtccgtatccgtgcttcatag 24413675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 14674286 - 14674231
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  14674286 caaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 43001817 - 43001762
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||| |||||  | ||||||||||||||||||||||||||||||||||    
T  43001817 caaattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcatag 43001762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39698558 - 39698518
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  39698558 caaattattagctgtgtcagcgtgtcagtgtccgtatccgt 39698518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 22013431 - 22013394
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 22013394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 6035500 - 6035444
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||| ||||| |||||||||||||  ||||  |||||||||||||||||    
T  6035500 caaattattagcggtgtcggcgtgtcagtgtctttgtctatatccgtgcttcatagg 6035444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 21522766 - 21522730
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 21522730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 21533332 - 21533296
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 21533296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 3966520 - 3966467
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttca 76  Q
    |||||||||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  3966520 caaattattagcggtgtcggcatgtcagtgtccagtgtccgtgtccgtgcttca 3966467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 15382449 - 15382420
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  15382449 gtgtccgtgtccgtatccgtgcttcatagg 15382420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 15382494 - 15382457
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  15382494 caaattattagctgtgtcggcgtgtcattgtccgtgtc 15382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 19552585 - 19552622
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  19552585 caaattattaactgtgtcggcgtgtcagtgtccgtgtc 19552622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 21191098 - 21191135
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| || ||||||||||||||||    
T  21191098 caaattattagctgtgtcggcatgtcagtgtccgtgtc 21191135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 36642804 - 36642841
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  36642804 caaattattaactgtgtcggcgtgtcagtgtccgtgtc 36642841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 6770559 - 6770523
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||| |||||||| |||||||||||||||||    
T  6770559 aaattattagttgtgtcagtgtgtcagtgtccgtgtc 6770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 15410491 - 15410527
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtc 15410527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 19579718 - 19579682
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgt 60  Q
    |||||||||||||||||| |||| |||||||||||||    
T  19579718 caaattattagctgtgtcggcgtatcagtgtccgtgt 19579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 41995445 - 41995417
Alignment:
Q  49 cagtgtccgtgtccgtatccgtgcttcat 77  Q
    |||||||||||||||||||||||||||||    
T  41995445 cagtgtccgtgtccgtatccgtgcttcat 41995417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 30298963 - 30298910
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcat 77  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30298963 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 30327831 - 30327778
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcat 77  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30327831 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 12895158 - 12895211
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||    
T  12895158 caaattattagctgtttcggcgtgtc-gtgtccgtgtccgtatctgtgcttcata 12895211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 24543997 - 24543941
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtc-cgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||| |||||| |||||||||||||  |||||||||||| |||||||||||    
T  24543997 aaattattagttgtgtcggcgtgtcagtgtctggtgtccgtatccatgcttcatagg 24543941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 22234954 - 22234983
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  22234954 gtgtccgtgtccgtatccgtgcttcatagg 22234983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 23293028 - 23293065
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  23293028 caaattattagctgtgtcggcgtgtcattgtccgtgtc 23293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 4157130 - 4157102
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  4157130 gtgtccgtgtccgtatccgtgcttcatag 4157102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 7970535 - 7970483
Alignment:
Q  27 attattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||| || |||||||| |||||||||| ||||||| ||| |||||||||||    
T  7970535 attattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 7970483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 20633457 - 20633429
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  20633457 gtgtccgtgtccgtatccgtgcttcatag 20633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 35723427 - 35723484
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtc----cgtgtccgtatccgtgcttcat 77  Q
    |||||||||||| ||||| |||||||||||||    |||||||||||| |||||||||    
T  35723427 caaattattagcggtgtcggcgtgtcagtgtcatgtcgtgtccgtatcggtgcttcat 35723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 49431042 - 49430982
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||| |||||||| ||||     ||||||||| ||||||||||||||    
T  49431042 caaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgtgcttcatag 49430982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 40052349 - 40052295
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  40052349 caaattattagctgtgtcggcgtgtcagtgt-cgtgtccgtatccgtgcttcatag 40052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 33359778 - 33359722
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtcc-gtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  33359778 caaattattagctgtgtcagcgtgtcagtgtctgtgtccggtgtccgtgcttcatag 33359722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 10318076 - 10318116
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10318076 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 10318116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 20503482 - 20503429
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||    
T  20503482 caaattatttgttgtgtcggcgtgtcagtgtc-gtgtccgtatccgtgcttcata 20503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 3865598 - 3865635
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3865598 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 3865635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 26508127 - 26508067
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatag 79  Q
    ||||||||||||||||||||||||||||| ||     ||||||||||||||| ||||||||    
T  26508127 caaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccgtatccgttcttcatag 26508067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 6525722 - 6525773
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttc 75  Q
    |||||||||||| |||||  | ||||||||| ||||||||||||||||||||    
T  6525722 caaattattagcggtgtcgacatgtcagtgtacgtgtccgtatccgtgcttc 6525773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 37077375 - 37077320
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||| | ||||| |||||||| ||||||||||  ||||||||||||||||    
T  37077375 caaattattatcggtgtcggcgtgtcactgtccgtgtctttatccgtgcttcatag 37077320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 13845580 - 13845614
Alignment:
Q  45 gtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    ||||| |||||||||||||||||||||||||||||    
T  13845580 gtgtcggtgtccgtgtccgtatccgtgcttcatag 13845614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 750706 - 750735
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  750706 gtgtccgtgtccgtatccgtgcttcatagg 750735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 1852641 - 1852600
Alignment:
Q  37 gtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  1852641 gtgtcagcgtgtccgtgtccgtatctgtatccgtgcttcata 1852600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 10335328 - 10335365
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  10335328 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 10335365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 14829707 - 14829670
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  14829707 caaattattagctgtgtcggcgtgtcagtgtctgtgtc 14829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 14979198 - 14979137
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc-----gtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||||||||| ||||| || |||||     ||||||||||||||||||||||||    
T  14979198 caaattattagctgtgtcggcgtgccattgtccttgtcgtgtccgtatccgtgcttcatagg 14979137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 22774114 - 22774167
Alignment:
Q  26 aattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||  |||||  |||||| ||||| |||||||||||||||||||||||    
T  22774114 aattattagtggtgtcgacgtgtctgtgtctgtgtccgtatccgtgcttcatag 22774167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 26492247 - 26492284
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  26492247 caaattattagctctgtcggcgtgtcagtgtccgtgtc 26492284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 14027987 - 14027959
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  14027987 gtgtccgtgtccgtatccgtgcttcatag 14027959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 21720781 - 21720741
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    |||||||||| | ||||| ||||||||||||||||||||||    
T  21720781 caaattattatcggtgtcggcgtgtcagtgtccgtgtccgt 21720741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 23870622 - 23870650
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  23870622 gtgtccgtgtccgtatccgtgcttcatag 23870650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 28812532 - 28812477
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgt-gtccgtatccgtgcttcatag 79  Q
    ||||||||||| |||||| ||||||| |||||||| ||| |||||||||||||||||    
T  28812532 caaattattagttgtgtcggcgtgtc-gtgtccgttgtctgtatccgtgcttcatag 28812477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 34910334 - 34910279
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatag 79  Q
    ||||||||||| |||||| ||||||| ||||| | ||||||||||||||||||||||    
T  34910334 caaattattagttgtgtcggcgtgtc-gtgtctggtgtccgtatccgtgcttcatag 34910279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 45451551 - 45451523
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  45451551 gtgtccgtgtccgtatccgtgcttcatag 45451523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 15680824 - 15680770
Alignment:
Q  26 aattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  15680824 aattattagctatgtcggcgtgtcagtgtccatgtccgtatccgtgcttcatagg 15680770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 7197340 - 7197394
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    ||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||    
T  7197340 aaattattagctgtgtcggcgtgtcaatgtctgtgttcgtatccgtgcttcatag 7197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 25791670 - 25791616
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  25791670 caaataattagcggtgtcggcgtgtcagtgtctgtgtccgtatccgtgcttcata 25791616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 18215228 - 18215284
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||||| ||| |||||| |||||||||||| | ||||||||||||||||    
T  18215228 caaattattagctgcgtcggcgtgttagtgtccgtgtctgcatccgtgcttcatagg 18215284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 12010022 - 12010057
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtg 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  12010022 caaattattagctgtgtcagcgtgtcagtgtccgtg 12010057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 24105695 - 24105658
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  24105695 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 24105658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 11072315 - 11072259
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||| | ||||| ||||||| |||| ||||||||||||| |||||||||||    
T  11072315 caaattattatcggtgtcggcgtgtctgtgttcgtgtccgtatccatgcttcatagg 11072259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 26019673 - 26019729
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||| |||| ||| | |||||||||  |||||||||||||||||||||||||||    
T  26019673 caaattactagcggtgccggcgtgtcaggatccgtgtccgtatccgtgcttcatagg 26019729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 32308137 - 32308081
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||| ||||| |||||||||||||| ||| |||||  ||||||||||||    
T  32308137 caaattattagcggtgtcggcgtgtcagtgtccatgttcgtatttgtgcttcatagg 32308081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 11665482 - 11665536
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcat 77  Q
    ||||||||||| ||||||||||||||| | ||| |||||||||||||| ||||||    
T  11665482 caaattattagttgtgtcagcgtgtcaatatccagtgtccgtatccgttcttcat 11665536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 19213807 - 19213773
Alignment:
Q  45 gtgtcagtgtccgtgtccgtatccgtgcttcatag 79  Q
    ||||||||||||||||||| |||||||||||||||    
T  19213807 gtgtcagtgtccgtgtccgcatccgtgcttcatag 19213773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 5409878 - 5409915
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  5409878 caaattattagctgtatcagcgtgtcagtgtccatgtc 5409915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 11061118 - 11061155
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| | |||||||||||||||||    
T  11061118 caaattattagctgtgtcggtgtgtcagtgtccgtgtc 11061155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 37742539 - 37742486
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 78  Q
    ||||||||||  ||||| ||||| ||||||||||||| ||||||||| ||||||    
T  37742539 aaattattagtggtgtcggcgtggcagtgtccgtgtctgtatccgtgtttcata 37742486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 9778480 - 9778452
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  9778480 gtgtccgtgtccgtatccgtgcttcatag 9778452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 13770707 - 13770671
Alignment:
Q  25 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  13770707 aaattattagctgtgtcggcgtatcagtgtccgtgtc 13770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 51828 - 51784
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatcc 68  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  51828 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcc 51784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 8815 - 8778
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8815 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 241611 - 241574
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||||||||||||||    
T  241611 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 241574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 13417 - 13380
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  13417 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 20189 - 20152
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  20189 caaattattagctgtgtcggcgtgtcattgtccgtgtc 20152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 21910 - 21947
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  21910 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 9870 - 9841
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  9870 gtgtccgtgtccgtatccgtgcttcatagg 9841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 63737 - 63708
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatagg 80  Q
    ||||||||||||||||||||||||||||||    
T  63737 gtgtccgtgtccgtatccgtgcttcatagg 63708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 23786 - 23729
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcatagg 80  Q
    |||||||||| ||||| ||| |||||||||||| |||| |||||||||| ||||||||    
T  23786 caaattattaactgtgacagtgtgtcagtgtccggtgttcgtatccgtgtttcatagg 23729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 71740 - 71679
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtc-----cg-tgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||| |||||||||||||     || ||||||||||||||||||||||    
T  71740 caaattattagctgtgtcggcgtgtcagtgtcgtgtccgatgtccgtatccgtgcttcatag 71679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 178861 - 178898
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  178861 caaattattagttgtgtcggcgtgtcagtgtccgtgtc 178898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 225310 - 225347
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 61  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  225310 caaattattatctgtgtcggcgtgtcagtgtccgtgtc 225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 23399 - 23371
Alignment:
Q  51 gtgtccgtgtccgtatccgtgcttcatag 79  Q
    |||||||||||||||||||||||||||||    
T  23399 gtgtccgtgtccgtatccgtgcttcatag 23371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 2940 - 2900
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  2940 caaattattagctatgttagcgtgtcagtgtccgtatccgt 2900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 46653 - 46625
Alignment:
Q  52 tgtccgtgtccgtatccgtgcttcatagg 80  Q
    |||||||||||||||||||||||||||||    
T  46653 tgtccgtgtccgtatccgtgcttcatagg 46625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 92824 - 92784
Alignment:
Q  24 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 64  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  92824 caaattattagcggtgtcggcgtgtcagtgtccgtatccgt 92784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University