View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_high_5 (Length: 430)
Name: NF18622_high_5
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 32449758 - 32450159
Alignment:
| Q |
13 |
aatatacataccctccattatttacatctgtctgatgttaccatttgataagcaaaatctagttcctcacagccaatgaagagttggaaaagactacaat |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32449758 |
aatatacacaccctccattatttacatctgtctgatgttaccatttgataagcaaaatctagttcctcacagccaatgaagagttggaaaagattacaat |
32449857 |
T |
|
| Q |
113 |
cagtcaattcatagaacgaaatcacaaggggcatattagaaaatnnnnnnntgtgcccaggtgttaggtgacatgtttaactaagggttaaattgaacaa |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32449858 |
cagtcaattcatagaacgaaatcacaagtggcatattagaaaatcaaaaaatgtgcccaggtgttaggtgacatgtttaactaagggttaaattgaacaa |
32449957 |
T |
|
| Q |
213 |
agcaagattatatttgtttgacaccaaaacaagacaagaaaaatgttaaaagaaatcttatggtgccgacacgtatgaatgagacttatgtatctagaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32449958 |
agcaagattatatttgtttgacaccaaaacaagacaagaaaaatgttaaaggaaatcttatggtgccgacacgtatgaatgagacttatgtatctagaca |
32450057 |
T |
|
| Q |
313 |
ctaagttacaaattaagaaagcatatataaggtatgatacataaaatattaatagtggtgagctttttcaaatatgaaaattactagatccccaatgggt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32450058 |
ctaagttacaaattaagaaagcatatataaggtatgatacataaaatattaatagtggtgagctttttcaaatatgaaaattactagatccccaatgggt |
32450157 |
T |
|
| Q |
413 |
at |
414 |
Q |
| |
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|| |
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| T |
32450158 |
at |
32450159 |
T |
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