View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18622_high_7 (Length: 407)
Name: NF18622_high_7
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 13888283 - 13887895
Alignment:
| Q |
7 |
tcgaagaatattaatcgagtaaacaatcattttggtccataaatataggaggtgttgttactacaatctttaaatgtattgacatgacaaaaacaccttc |
106 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888283 |
tcgaagcacattaatcgagtaaacaatcattttggtccataaatataggaggtgttattactacaatctttaaatgtattgacatgacaaaaacaccttc |
13888184 |
T |
|
| Q |
107 |
aagtgtatcaataaaaatgactaaaagaagatattcgtgaac----caaactaacaaaacacattcaacaatcaaattgattaacaatagttgcatttag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888183 |
aagtgtatcaataaaaatgactaaaagaagacattcgtgaaccgaactaactaacaaaacacattcaacaatcaaattgattaacaatagttgcatttag |
13888084 |
T |
|
| Q |
203 |
acacgttttgtgattttgatactattgtaacaacacctcacacgtttaagaaccaaaataaatgtttactttgcattaata--nnnnnnnngctgcacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
13888083 |
acacgttttgtgattttgatactattgtaatgacacctcacacgtttaagaaccaaaataactgtttactttgcattaatatttttttttggctgcacct |
13887984 |
T |
|
| Q |
301 |
aatcacttattaaatgaagacaaatatgaaagatatatcaatatcaatgaataaaaaagtgtccaaatagctaaaattaaacttttatt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13887983 |
aatcacttattaaatgaagacaaatatgaaagatatatcaatatcaatgaataaaaaagtaaccaaatagctaaaattaaacttttatt |
13887895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University