View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_high_8 (Length: 365)
Name: NF18622_high_8
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 32224207 - 32223867
Alignment:
| Q |
1 |
ggtctcgtcatacaaatcaattgttagccatttttatggtgcacttgataattatgcaatgtatgtttcacttattattttatgcaaccaaattgctcga |
100 |
Q |
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| T |
32224207 |
ggtctcgtcatacaaatcaattgttagccatttctatggcgcacttgataattatgcaatgtatgtttcacttaatattttatgcaaccaaattgctcga |
32224108 |
T |
|
| Q |
101 |
gtagaccaatttatggctgctatgtatgatgtccatactttttgcatttatgacttaaaatattggatttattttgtgaagagactctacttctagtttc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |
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| T |
32224107 |
gtagaccaatttatggctgttatgtatgatgtccatacttcttgcatttatgacttaaaatattgtatttattttgtgaagagacactgcttctagtttc |
32224008 |
T |
|
| Q |
201 |
attgcttgaattagttctaggaaacctttctctacctctaaagttttatcctcacaattggttgaggtctaccttcctttgcacaaatcccccatctgtc |
300 |
Q |
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| T |
32224007 |
attgcttgaattagttatagcaaacctttctctacctctaaagttttatcctctcaattggttgaggtctaccttcctttgcacaaatcccccatctgtc |
32223908 |
T |
|
| Q |
301 |
agattttgcagaagctttaaatgtttggtcgattatgtcact |
342 |
Q |
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| T |
32223907 |
agattttgcagaagctttaaatgttt-gtcgattatgtcact |
32223867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 32241473 - 32241143
Alignment:
| Q |
16 |
atcaattgttagccatttttatggtgcacttgataattatgcaatgtatgtttcacttattattttatgcaaccaaattgctcgagtagaccaattta-- |
113 |
Q |
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| T |
32241473 |
atcaattgtcagccatttctatggtgcacttgataattatgcaatgtatgtttcacttaatattttatgtaactaaattgctcgagtagaacaatataat |
32241374 |
T |
|
| Q |
114 |
---tggctgctatgtatgatgtccatactttttgcatttatgacttaaaatattggatttattttgtgaagagactctacttctagtttcattgcttgaa |
210 |
Q |
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|||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||| |
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| T |
32241373 |
ttgtggctgttatgtatgacgttcatacttcttgcatttatgacttaaaatattggatttattttgtgaagagccactgcttctaatttcattgcttgaa |
32241274 |
T |
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| Q |
211 |
ttagttctaggaaacctttctctacctctaaagttttatcctcacaattggttgaggtctaccttcctttgcacaaatcccccatctgtcagattttgca |
310 |
Q |
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| T |
32241273 |
ttagttcaaggaaaccttgctctacctctaaagttttgccctc---tttggttgaggtctaccatcctttgcacaaatccctcatctgtcagattttgaa |
32241177 |
T |
|
| Q |
311 |
gaagctttaaatgtttggtcgattatgtcactcg |
344 |
Q |
| |
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| T |
32241176 |
ggagctttaaatgtttggtcgattatgtcactcg |
32241143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 32227796 - 32227998
Alignment:
| Q |
39 |
gtgcacttgataattatgcaatgtatgtttcacttattattttatgcaaccaaattgctcgagtagaccaatttatggctgctatgtatgatgtccatac |
138 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
32227796 |
gtgcacttgataactatgcaatgaatgtttcacttaatattttatgtaaccaaattgctcgagtagaacaatttgtggatgctatgtatgatgtccatag |
32227895 |
T |
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| Q |
139 |
tttttgcatttatgacttaaaatattggatttattttgtgaagagactctacttctagtttcattgcttgaattagttctaggaaacctttctctacctc |
238 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
32227896 |
ttcttgcatttatgacttagaatattggatttattttgtgaagagccactacttctagtttcattgcttgaattatttctaggaaaccttgctctacctc |
32227995 |
T |
|
| Q |
239 |
taa |
241 |
Q |
| |
|
||| |
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| T |
32227996 |
taa |
32227998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 16257984 - 16257738
Alignment:
| Q |
1 |
ggtctcgtcatacaaatcaattgttagccatttttatggtgcacttgataattatgcaatgtatgtttcacttattattttatgcaaccaaattgctcga |
100 |
Q |
| |
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|||||| | ||||||||||| || || ||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| | |
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| T |
16257984 |
ggtctcttaatacaaatcaactgccaggcatttatgtggtgcacttgataactatgcaatgtatgtttctcttattattttatgtaaccaaattgctcaa |
16257885 |
T |
|
| Q |
101 |
gtagaccaatttatggctgctatgtatgatgtccatactttttgcatttatgacttaaaatattggatttattttgtgaagagactctacttctagtttc |
200 |
Q |
| |
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||||| |||||| ||||||||||||||||| | ||||||| |||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |
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| T |
16257884 |
gtagaacaatttgtggctgctatgtatgatattcatacttcttgcatttctgacttagaatatttcatttattttgtgaagagccactacttctagtttc |
16257785 |
T |
|
| Q |
201 |
attgcttgaattagttctaggaaacctttctctacctctaaagtttt |
247 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16257784 |
attgcttgaattagttctaggaaaccttgctctacctctaaagtttt |
16257738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 16257730 - 16257663
Alignment:
| Q |
278 |
tttgcacaaatcccccatctgtcagatttt-gcagaagctttaaatgtttggtcgattatgtcactcg |
344 |
Q |
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|||||| |||||| ||| ||||||||||| |||| || || |||||||||||||||||||||||||| |
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| T |
16257730 |
tttgcagaaatccgtcatttgtcagatttttgcaggagattaaaatgtttggtcgattatgtcactcg |
16257663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 306
Target Start/End: Original strand, 9619357 - 9619613
Alignment:
| Q |
38 |
ggtgcacttgataattatgcaatgtatgtttcacttattattttatgcaaccaaattgctcgagtagaccaatttatggctgctatgtatgatgtccata |
137 |
Q |
| |
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||||||||| |||| | ||||||||||||| |||| ||||| || |||||||||||| ||||| | ||||| |||||| ||| ||| ||||||||| |
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| T |
9619357 |
ggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaataatttgtggctgttatatataatgtccata |
9619456 |
T |
|
| Q |
138 |
ctttttgcatttatgacttaaaatattggatttattttgtgaagagactctacttctagtttcattgcttgaattagttctaggaaacctttctctacct |
237 |
Q |
| |
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| |||||||||||| | ||||||| | |||||||| ||||| | |||||||| || | | | || ||||||| |||||||||||||||| |
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| T |
9619457 |
c---ttgcatttatgatattgaatattgaacttattttgaaaagagccgttacttctacttccgt------agttggttctagaaaacctttctctacct |
9619547 |
T |
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| Q |
238 |
ctaaagttttatcctcacaattggttgaggtctaccttcctttgcacaaatcccccatctgtcagattt |
306 |
Q |
| |
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| |||||| | |||| ||||||| |||||||| ||||||||||||||| | || |||||||||| |
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| T |
9619548 |
ccaaagttctgccctc---tttggttgcggtctaccctcctttgcacaaatcacttatttgtcagattt |
9619613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 8675805 - 8675880
Alignment:
| Q |
266 |
ggtctaccttcctttgcacaaatcccccatctgtcagattttgcagaagctttaaatgtttggtcgattatgtcact |
342 |
Q |
| |
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||||||||||||||| |||||||||| || ||||||| |||| | |||| |||||||||| |||||| ||||||| |
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| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcaga-tttgttggagctgtaaatgtttgttcgattgtgtcact |
8675880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 19969097 - 19969041
Alignment:
| Q |
13 |
caaatcaattgttagccatttttatggtgcacttgataattatgcaatgtatgtttc |
69 |
Q |
| |
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||||||||| || |||| |||||||| ||||||||||| ||||||| ||||||||| |
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| T |
19969097 |
caaatcaatggtcggccaattttatggagcacttgataactatgcaaagtatgtttc |
19969041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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