View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_12 (Length: 363)
Name: NF18622_low_12
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 24993979 - 24994314
Alignment:
| Q |
13 |
aatatccagtgcacccttgaagttgtttggggtcagcatctgcatagcagcttctccttttcaaaaaggnnnnnnnnnc-------gacccactatgcca |
105 |
Q |
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| T |
24993979 |
aatatccagtgcacccttgaagttgtttggggtcagcatctgcatagcagcttctccttttcaaaaaggaaaaaaaaataaaaaatgacccactatgcca |
24994078 |
T |
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| Q |
106 |
cgcttcaaatatgaccaataacttgtccagatacaaatactgatcgtcgagtctacctaccttgcatttcatgcagtagcaacattttctgtaataatac |
205 |
Q |
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| T |
24994079 |
cacttcaaatatggctaataacttgtccagatacatatactgatcgtcgagtctacctaccttgcatttcgtgcagtagcaacattttctgtaataatac |
24994178 |
T |
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| Q |
206 |
tcatcgcaacttctctaacttctaagctaaattctccacaagcttagtatgtctactataactcgtttatgcctaagagagagtcggtgatttacttgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24994179 |
tcatcgcaacttctctaacttctaagctaaattctccacaagct---tacgtctactataactcgtttaagcctaagagagagtcggtgatttacttgaa |
24994275 |
T |
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| Q |
306 |
gtgtagtaagaactctcagcttgaaactcaacagctcct |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24994276 |
gtgtagtaagaactctcagcttgaaactcaacagctcct |
24994314 |
T |
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