View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_13 (Length: 348)
Name: NF18622_low_13
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 44447825 - 44448121
Alignment:
| Q |
1 |
aggaagaagaagaagctcatggaaagaagaaacaccatttctttggctgaacatatgtgtataatataattatataataagcacacaagcatattatgga |
100 |
Q |
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| T |
44447825 |
aggaagaagaagaagctcatggaaagaagaaacaccatttctttggctgaacatatgtgtataatataattatataataagcacacaagcatattatgga |
44447924 |
T |
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| Q |
101 |
gatattcattctgcttagctttgtcttataattaattatgcttttggcttatttatgtgtattagtattaagttaatcttcctgtttgctttgagtgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44447925 |
gatattcattctgcttagctttgtcttataattaattatgcttttggcttatttatgtgtattagtattaagttaatcttccagtttgctttgagtgagt |
44448024 |
T |
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| Q |
201 |
ggtttggagaatgtttccagcttggtgtcatatagatgtatgtatgaatctatgttgtgtcaactgatttgtacacaatatacggttgtaaaagaatgtg |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44448025 |
ggtttggagaatgtttccagcttggtgtca--------tatgtatgaatctatgttgtgtcaactgatatgtacacaatatacggttgtaaaagaatgtg |
44448116 |
T |
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