View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_14 (Length: 304)
Name: NF18622_low_14
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 286
Target Start/End: Original strand, 41230513 - 41230752
Alignment:
| Q |
40 |
gaagaatatccaagtgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttctgtct |
139 |
Q |
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| T |
41230513 |
gaagcatatccaactgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttc----- |
41230607 |
T |
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| Q |
140 |
ttcactacaataagatttt-ttcgactcatgagaaagagctattctgcaaattgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgactatt |
238 |
Q |
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| T |
41230608 |
---actacaataagatttttttcgactcatgagaaagagctattctccaaattgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgagtatt |
41230704 |
T |
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| Q |
239 |
ctccacaatttgatattttctcttgtaagctttcatcccagcaacttc |
286 |
Q |
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| T |
41230705 |
ctccactattggatattttctcttgtaagctttcatcccagcaacttc |
41230752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 42414337 - 42414434
Alignment:
| Q |
188 |
aattgcagtctcaaaaatgcatcaa-tacttgcacatgcaagtttgactattctccacaatttgatattttctcttgtaagctttcatcccagcaactt |
285 |
Q |
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| T |
42414337 |
aattgcagtctcaaaaattcatcaattgattgcacaggcaagtttgaccattctccacagttggat-ctttctctcagaagctctcatcccagcaactt |
42414434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 42413954 - 42414057
Alignment:
| Q |
40 |
gaagaatatccaagtgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttctgtct |
139 |
Q |
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|||| ||||||||||||||||||||||| |||| ||| ||||| |||||| ||| | | |||| ||||||||||| | |||||||||||||| ||| |
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| T |
42413954 |
gaagcatatccaagtgaaataaagacacgagaacttgacattcatttaggccaggc-tgtgatcgcgcaggacagtcacgccggaggtaaatttctttct |
42414052 |
T |
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| Q |
140 |
ttcac |
144 |
Q |
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||||| |
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| T |
42414053 |
ttcac |
42414057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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