View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18622_low_16 (Length: 227)

Name: NF18622_low_16
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18622_low_16
NF18622_low_16
[»] chr7 (19 HSPs)
chr7 (14-193)||(1710745-1710926)
chr7 (57-123)||(33894710-33894776)
chr7 (50-112)||(8427107-8427169)
chr7 (57-111)||(29363603-29363657)
chr7 (58-123)||(25014032-25014097)
chr7 (57-124)||(30751601-30751668)
chr7 (71-122)||(34754745-34754796)
chr7 (67-117)||(8094395-8094445)
chr7 (57-117)||(23214944-23215004)
chr7 (57-124)||(1418501-1418568)
chr7 (68-123)||(12242327-12242382)
chr7 (53-123)||(3836600-3836670)
chr7 (66-123)||(20547320-20547377)
chr7 (154-199)||(24363617-24363662)
chr7 (52-108)||(389936-389992)
chr7 (67-123)||(36598287-36598343)
chr7 (67-123)||(39542231-39542287)
chr7 (149-193)||(40428570-40428614)
chr7 (67-119)||(40734749-40734801)
[»] chr1 (40 HSPs)
chr1 (46-123)||(32515351-32515428)
chr1 (58-206)||(10199330-10199476)
chr1 (57-206)||(6292495-6292641)
chr1 (57-123)||(26400061-26400127)
chr1 (57-123)||(28467230-28467296)
chr1 (55-123)||(9507314-9507382)
chr1 (66-181)||(31517670-31517783)
chr1 (60-123)||(43420341-43420404)
chr1 (51-113)||(3215815-3215877)
chr1 (54-124)||(5157154-5157224)
chr1 (51-101)||(33527099-33527149)
chr1 (58-103)||(2832075-2832120)
chr1 (67-199)||(6279408-6279538)
chr1 (54-123)||(7252538-7252607)
chr1 (51-112)||(9602569-9602630)
chr1 (67-104)||(33975676-33975713)
chr1 (67-123)||(4363566-4363621)
chr1 (56-112)||(15581348-15581404)
chr1 (46-114)||(24460311-24460379)
chr1 (61-117)||(28837278-28837334)
chr1 (57-124)||(4549462-4549529)
chr1 (57-112)||(21002249-21002304)
chr1 (154-205)||(33722417-33722468)
chr1 (56-107)||(49282634-49282684)
chr1 (57-123)||(3319867-3319933)
chr1 (57-123)||(6659763-6659829)
chr1 (57-123)||(26866396-26866462)
chr1 (57-110)||(1565067-1565120)
chr1 (55-120)||(14559058-14559123)
chr1 (87-207)||(37811853-37811971)
chr1 (157-206)||(51929794-51929843)
chr1 (54-122)||(1662657-1662725)
chr1 (55-111)||(11893512-11893568)
chr1 (67-123)||(16980886-16980942)
chr1 (54-86)||(22416829-22416861)
chr1 (67-123)||(27807198-27807254)
chr1 (67-107)||(29793629-29793669)
chr1 (51-123)||(34668740-34668811)
chr1 (71-123)||(37272529-37272581)
chr1 (95-123)||(43371850-43371878)
[»] chr3 (24 HSPs)
chr3 (51-123)||(22667486-22667558)
chr3 (51-123)||(22724125-22724197)
chr3 (57-123)||(50211818-50211884)
chr3 (51-115)||(44014713-44014777)
chr3 (61-123)||(27795938-27796000)
chr3 (70-123)||(11041160-11041213)
chr3 (50-123)||(24158430-24158503)
chr3 (66-181)||(48588684-48588797)
chr3 (68-123)||(20210860-20210915)
chr3 (57-112)||(21872216-21872271)
chr3 (57-123)||(32663721-32663787)
chr3 (51-117)||(41057244-41057310)
chr3 (81-122)||(1810061-1810102)
chr3 (71-123)||(45590734-45590786)
chr3 (51-122)||(5407369-5407440)
chr3 (60-206)||(41644369-41644513)
chr3 (57-123)||(2413600-2413666)
chr3 (95-199)||(14548680-14548782)
chr3 (55-120)||(27294432-27294497)
chr3 (57-118)||(49605772-49605833)
chr3 (54-122)||(1395723-1395791)
chr3 (59-123)||(33880480-33880544)
chr3 (149-205)||(48528559-48528615)
chr3 (51-123)||(50015969-50016041)
[»] chr8 (26 HSPs)
chr8 (51-121)||(9700086-9700156)
chr8 (51-115)||(16162851-16162915)
chr8 (49-124)||(43393685-43393760)
chr8 (67-123)||(1664452-1664508)
chr8 (57-123)||(2487929-2487995)
chr8 (57-123)||(6496812-6496878)
chr8 (57-123)||(33553323-33553389)
chr8 (57-110)||(10488559-10488612)
chr8 (70-123)||(24326114-24326167)
chr8 (57-121)||(14926903-14926967)
chr8 (154-206)||(30277261-30277313)
chr8 (68-123)||(7918713-7918768)
chr8 (58-120)||(8629199-8629261)
chr8 (57-123)||(10062062-10062128)
chr8 (52-110)||(44236739-44236797)
chr8 (57-86)||(9130240-9130269)
chr8 (70-123)||(21130695-21130748)
chr8 (51-84)||(43717849-43717882)
chr8 (57-117)||(2606138-2606198)
chr8 (154-206)||(8062331-8062383)
chr8 (51-123)||(10075468-10075540)
chr8 (57-105)||(18331815-18331863)
chr8 (154-206)||(28769355-28769407)
chr8 (51-123)||(30191056-30191128)
chr8 (68-112)||(31884872-31884916)
chr8 (49-85)||(43393625-43393661)
[»] chr4 (23 HSPs)
chr4 (48-123)||(2996656-2996731)
chr4 (52-123)||(27123268-27123339)
chr4 (69-123)||(18628486-18628540)
chr4 (68-115)||(4691939-4691986)
chr4 (57-123)||(19429391-19429457)
chr4 (55-124)||(25896866-25896935)
chr4 (58-123)||(46860001-46860066)
chr4 (61-121)||(18512440-18512500)
chr4 (68-123)||(4071961-4072016)
chr4 (47-86)||(17822776-17822815)
chr4 (59-122)||(21157852-21157915)
chr4 (58-112)||(1017122-1017176)
chr4 (48-122)||(17975249-17975323)
chr4 (53-87)||(22845623-22845657)
chr4 (57-107)||(56186819-56186869)
chr4 (57-122)||(2977897-2977962)
chr4 (51-84)||(19394864-19394897)
chr4 (54-107)||(32420976-32421029)
chr4 (47-84)||(45104307-45104344)
chr4 (71-120)||(56007765-56007814)
chr4 (67-123)||(33534100-33534156)
chr4 (154-206)||(43824285-43824337)
chr4 (68-112)||(50298609-50298653)
[»] chr2 (25 HSPs)
chr2 (45-117)||(28803439-28803511)
chr2 (57-123)||(11513979-11514045)
chr2 (57-112)||(41170704-41170759)
chr2 (57-107)||(11063292-11063342)
chr2 (57-123)||(22878181-22878247)
chr2 (49-123)||(37474848-37474921)
chr2 (57-174)||(43456628-43456743)
chr2 (69-122)||(13866962-13867015)
chr2 (48-123)||(6547972-6548047)
chr2 (49-112)||(15370236-15370299)
chr2 (57-112)||(40944007-40944062)
chr2 (48-122)||(3078520-3078594)
chr2 (57-123)||(4350773-4350839)
chr2 (66-108)||(25609894-25609936)
chr2 (59-109)||(33981220-33981270)
chr2 (54-108)||(40158816-40158870)
chr2 (67-124)||(9996820-9996877)
chr2 (57-90)||(30990360-30990393)
chr2 (47-124)||(32364642-32364719)
chr2 (55-112)||(42852621-42852678)
chr2 (153-193)||(1647251-1647291)
chr2 (52-116)||(5045084-5045148)
chr2 (67-123)||(9478382-9478438)
chr2 (51-107)||(40759259-40759315)
chr2 (67-123)||(43141955-43142011)
[»] chr6 (20 HSPs)
chr6 (52-123)||(2460067-2460138)
chr6 (57-117)||(35070388-35070448)
chr6 (54-124)||(24973945-24974015)
chr6 (77-193)||(34538159-34538273)
chr6 (68-124)||(8420129-8420185)
chr6 (51-107)||(12111066-12111122)
chr6 (57-124)||(1432221-1432288)
chr6 (67-106)||(9667916-9667955)
chr6 (57-123)||(27894116-27894182)
chr6 (51-112)||(2457035-2457096)
chr6 (80-121)||(10353705-10353746)
chr6 (156-193)||(29957940-29957977)
chr6 (50-123)||(32171297-32171370)
chr6 (70-126)||(3155255-3155311)
chr6 (67-111)||(3738196-3738240)
chr6 (67-107)||(6742910-6742950)
chr6 (51-79)||(12811391-12811419)
chr6 (67-123)||(30865566-30865622)
chr6 (67-123)||(32917280-32917336)
chr6 (95-131)||(32997591-32997627)
[»] chr5 (26 HSPs)
chr5 (57-124)||(25720338-25720405)
chr5 (54-116)||(10771806-10771868)
chr5 (51-123)||(7550433-7550505)
chr5 (67-123)||(8090019-8090075)
chr5 (72-120)||(34975450-34975498)
chr5 (54-101)||(11615572-11615619)
chr5 (49-112)||(40335786-40335849)
chr5 (67-124)||(4855777-4855834)
chr5 (57-122)||(39257315-39257380)
chr5 (67-123)||(12407661-12407717)
chr5 (68-199)||(37611147-37611276)
chr5 (68-199)||(37787877-37788006)
chr5 (50-113)||(42034153-42034216)
chr5 (47-105)||(25705570-25705628)
chr5 (67-124)||(14980591-14980648)
chr5 (72-121)||(17259302-17259351)
chr5 (53-122)||(31723889-31723958)
chr5 (67-123)||(1084070-1084126)
chr5 (51-87)||(6938648-6938684)
chr5 (53-85)||(7674768-7674800)
chr5 (73-121)||(13781812-13781860)
chr5 (51-123)||(14599287-14599359)
chr5 (53-105)||(14706201-14706253)
chr5 (67-123)||(21782587-21782643)
chr5 (67-123)||(32849261-32849317)
chr5 (71-123)||(37968960-37969012)
[»] scaffold0199 (1 HSPs)
scaffold0199 (67-123)||(6893-6949)
[»] scaffold0050 (1 HSPs)
scaffold0050 (45-83)||(58865-58903)
[»] scaffold0141 (1 HSPs)
scaffold0141 (50-119)||(9692-9761)
[»] scaffold0020 (1 HSPs)
scaffold0020 (51-103)||(159888-159940)
[»] scaffold0110 (1 HSPs)
scaffold0110 (79-123)||(35775-35819)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 1710926 - 1710745
Alignment:
Q  14 agataatacttcagtttatacaaatatctctatttaaggcctatttg-----gattagcttatttgagcttatctactaacacaatcacttgtgagactg 108  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||||     |||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  1710926 agatgatacttcattttatacaaatatctctgtttaaggcttatttgaattagattagcttatttgagcttatctactaacataatcccttgtgacactg 1710827  T
Q  109 tttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagctta 193  Q
    ||||| | ||  | ||  ||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||    
T  1710826 tttga-aaag--tttaagaaaacagcttacaacatctccataaactgttttcagcttatttccataacctctctagaatagctta 1710745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 33894776 - 33894710
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||||||||||| | | ||| || |||||||||||||||||| ||||||||||    
T  33894776 tttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttat 33894710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 8427169 - 8427107
Alignment:
Q  50 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||||||||||   ||||||||||||||||||||||| ||  |||||||||||||||||    
T  8427169 aggcctatttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 29363657 - 29363603
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgttt 111  Q
    |||||||| |||||||||| |||||||||||||| || |||||||||||||||||    
T  29363657 tttggattggcttatttgaacttatctactaacataagcacttgtgagactgttt 29363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 25014097 - 25014032
Alignment:
Q  58 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||||||||  ||||||||| |||||| ||||||| |||||||||||||||| ||||    
T  25014097 ttggattagtttatttgaatttatctactgacacaagcacttgtaagactgtttgagagagtttat 25014032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 30751668 - 30751601
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||| ||||||| | |||||||||| ||| || |||||||| ||||||||| |||||||||||    
T  30751668 tttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttata 30751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 34754745 - 34754796
Alignment:
Q  71 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    |||||||||||||| | |||||| ||||| ||||||||||||||||||||||    
T  34754745 tttgagcttatctattgacacaaacacttatgagactgtttgagagagctta 34754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 8094445 - 8094395
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagaga 8094395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 23215004 - 23214944
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    ||||||||  ||||||||| ||||||||||| || || ||||| |||||||||||||||||    
T  23215004 tttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagaga 23214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 1418568 - 1418501
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||  ||||||||||||||||||||  || || ||||| |||| ||||||| |||||||||||    
T  1418568 tttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttata 1418501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 12242382 - 12242327
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| | ||||||| ||| || | |||||||||||||||||||||||||||    
T  12242382 ttatttgaggtgatctactgacataacctcttgtgagactgtttgagagagcttat 12242327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 3836600 - 3836670
Alignment:
Q  53 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||||||  ||||||||||||||||||||  |  || ||||||||| |||||||| |||| |||||    
T  3836600 cctatttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttat 3836670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 20547320 - 20547377
Alignment:
Q  66 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| || ||||||| | ||| || ||||||||| |||||||||||||||||||    
T  20547320 gcttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttat 20547377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 24363617 - 24363662
Alignment:
Q  154 tgttttcagctaatttccataacctctctagaatagcttacgaaaa 199  Q
    ||||||||||| |||||||||||||||| || |||||||| |||||    
T  24363617 tgttttcagcttatttccataacctctccaggatagcttatgaaaa 24363662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 389992 - 389936
Alignment:
Q  52 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactg 108  Q
    ||||||||||||| |||||||||||| ||||||||  || ||  |||||||||||||    
T  389992 gcctatttggattggcttatttgagcctatctacttccataagtacttgtgagactg 389936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 36598287 - 36598343
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| |||| ||||| ||| || || |||||||| |||||||||||||||||    
T  36598287 cttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttat 36598343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 39542231 - 39542287
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||| |||||||||| || || |||||| ||||| |||| |||||||||||    
T  39542231 cttatttgagtttatctactagcataagcacttgcgagacagttttagagagcttat 39542287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 40428614 - 40428570
Alignment:
Q  149 taaactgttttcagctaatttccataacctctctagaatagctta 193  Q
    |||||||||||||||| |||||||||| |||| ||| ||||||||    
T  40428614 taaactgttttcagcttatttccataagctctttaggatagctta 40428570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 40734749 - 40734801
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagc 119  Q
    |||| ||||||||||||||||| | ||  |||||||||| |||||||||||||    
T  40734749 cttacttgagcttatctactaatataaatacttgtgagattgtttgagagagc 40734801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 32515351 - 32515428
Alignment:
Q  46 tttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||| ||||| ||||||||||| |||||||| ||||||||||||| || |||||||||||||||||| ||||||||||    
T  32515351 tttatggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 10199330 - 10199476
Alignment:
Q  58 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgtt 157  Q
    |||||||  |||||||||||||||||||||||| || ||||||||| ||| |||| |||| || ||   |||| |||| |  |||| ||| |||  ||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatg--aaaatagcttatgacatgttcataagttgtt 10199427  T
Q  158 ttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    ||||||| |||| ||||| ||||||| ||||||||| ||||||||||||    
T  10199428 ttcagcttattttcataagctctctaaaatagcttatgaaaaaagctta 10199476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 6292641 - 6292495
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 156  Q
    ||||||||  |||||||||||||||||||| ||| || ||||| ||||| |||||| ||||  ||   | ||||||||| |  |||| ||| ||| ||||    
T  6292641 tttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattt---ttaaaacagcttatgacatgttcataagctgt 6292545  T
Q  157 tttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    |||||||| |||| ||||| ||||| | ||||| ||||||||| ||||||    
T  6292544 tttcagcttattttcataagctctccaaaatagtttacgaaaatagctta 6292495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 26400127 - 26400061
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| ||||||||||| |||| ||||| || ||| |||||||||| |||||||||||||||||    
T  26400127 tttggatttgcttatttgagattatatactagcataataacttgtgagattgtttgagagagcttat 26400061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 28467230 - 28467296
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| |||| |||||||||||||| | |||||| ||||||||| |||||||| ||||||||||    
T  28467230 tttggattggcttgtttgagcttatctattgacacaaacacttgtgaaactgtttgggagagcttat 28467296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 9507382 - 9507314
Alignment:
Q  55 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||| ||| |||||||||||||||||||||| || |  || ||||||||||||||| ||||||||||    
T  9507382 tatttgaatttgcttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 31517670 - 31517783
Alignment:
Q  66 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagcta 165  Q
    |||||||||||||||| ||||  || || |||||||||||||||||| |||| ||  ||| |||||| ||||  |||| ||| ||| ||||||||||||     
T  31517670 gcttatttgagcttatttactggcataagcacttgtgagactgtttgggagaact--tatcaaaacaactcatgacatgttcataagctgttttcagctt 31517767  T
Q  166 atttccataacctctc 181  Q
    |||| ||||| |||||    
T  31517768 attttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 43420404 - 43420341
Alignment:
Q  60 ggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||| |||| |||||    
T  43420404 ggattagcttatttgagcttatctacagacataaacacttgtgagactgcttgtgagatcttat 43420341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 3215877 - 3215815
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttga 113  Q
    ||||||||||||||| |||||||||| |||| || ||||| || || ||||||||||||||||    
T  3215877 ggcctatttggattatcttatttgagtttatttattaacataagcatttgtgagactgtttga 3215815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 5157224 - 5157154
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    |||||||||||  ||||||||| |||||||||  ||| || ||||||||| |||||||| |||||||||||    
T  5157224 ctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttata 5157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 33527099 - 33527149
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgt 101  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| |||||||    
T  33527099 ggccaatttggattaccttatttgagcttatctgctaacacaagcacttgt 33527149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 2832120 - 2832075
Alignment:
Q  58 ttggattagcttatttgagcttatctactaacacaatcacttgtga 103  Q
    |||||||||||||||||||||||||||||| || || |||||||||    
T  2832120 ttggattagcttatttgagcttatctactagcataagcacttgtga 2832075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 6279538 - 6279408
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaa 166  Q
    ||||||| |||||| ||||| ||| || |||||||| | |||||||||||||||  |||  |||||| | || |||| | | |||  ||||||||||  |    
T  6279538 cttatttcagcttaactactgacataagcacttgtgtggctgtttgagagagct--tatggaaacagttaaccacatgtccataagttgttttcagcgta 6279441  T
Q  167 tttccataacctctctagaatagcttacgaaaa 199  Q
    ||||||||| |||||||| |||||||| |||||    
T  6279440 tttccataagctctctaggatagcttatgaaaa 6279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 7252538 - 7252607
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||| ||||||||||||||||| ||||||||||| ||  ||||| || |||||||| |||| |||||    
T  7252538 ctatttgaattagcttatttgagctaatctactaacataagtacttgagaaactgtttgggagaacttat 7252607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 9602569 - 9602630
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    ||||||||||||||  ||||| |||||||||||||||||  || ||||||||||||| ||||    
T  9602569 ggcctatttggattgacttatctgagcttatctactaacttaagcacttgtgagactatttg 9602630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 33975713 - 33975676
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgag 104  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  33975713 cttatttgagcttatctactaacacaagcacttgtgag 33975676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 4363566 - 4363621
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||||||    
T  4363566 cttatttgagcttatctacttacataat-acttgtgagattgtttgagagcgcttat 4363621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 15581404 - 15581348
Alignment:
Q  56 atttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    ||||||| |||||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  15581404 atttggaatagcttattttagcttatctactgacataagcacttgtgagattgtttg 15581348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 24460311 - 24460379
Alignment:
Q  46 tttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgag 114  Q
    |||| ||||| ||||||||  ||||||||| |||||||||| |||  | ||||||||||||||||||||    
T  24460311 tttagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttgag 24460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 28837278 - 28837334
Alignment:
Q  61 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    |||| ||||||||||||||||||||| ||| || |||||| |||||||||| |||||    
T  28837278 gattggcttatttgagcttatctactgacataagcacttgagagactgtttaagaga 28837334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 4549462 - 4549529
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    |||||||| ||||||||||| |||||||||  || || || || |||||||||||| |||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttata 4549529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 21002304 - 21002249
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||| |||||||||||||||||||||  || ||  |||||||||||||||||    
T  21002304 tttggattggcttatttgagcttatctacttgcataagaacttgtgagactgtttg 21002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 33722417 - 33722468
Alignment:
Q  154 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctt 205  Q
    ||||||||||| ||||||||||||||| ||| ||| |||| |||||||||||    
T  33722417 tgttttcagcttatttccataacctctgtaggataacttatgaaaaaagctt 33722468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 49282634 - 49282684
Alignment:
Q  56 atttggattagcttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    ||||||||||||||||||||| || |||||||||| || |||||||||||||    
T  49282634 atttggattagcttatttgag-ttgtctactaacataaacacttgtgagact 49282684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 3319867 - 3319933
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||  ||||||||||||||||||||| || || || || |||||||| |||| |||||||||    
T  3319867 tttggattgacttatttgagcttatctactagcaaaagcaattatgagactgattgaaagagcttat 3319933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 6659829 - 6659763
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||  ||||||| ||||||||||||| || || ||||||||||||| |||| || |||||||    
T  6659829 tttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttat 6659763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 26866462 - 26866396
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||  ||||||| |||||||||||||||||||  |||| ||||||| ||||  |||||||||    
T  26866462 tttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagagcttat 26866396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 1565067 - 1565120
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 110  Q
    ||||||||| ||| |||||| |||||||||| ||||| ||||||||||| ||||    
T  1565067 tttggattaacttttttgagattatctactagcacaagcacttgtgagagtgtt 1565120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 14559123 - 14559058
Alignment:
Q  55 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 120  Q
    |||||||||||||||||||||| ||||||||| ||| || || ||| |||| |||||  |||||||    
T  14559123 tatttggattagcttatttgaggttatctactgacataaacatttgcgagattgtttaggagagct 14559058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 37811971 - 37811853
Alignment:
Q  87 aacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaa 186  Q
    |||||||||| |||||| |||| |||||||| |||||   ||||||||| |  |||| ||| ||||||||||||| || |||||||| | ||||| |  |    
T  37811971 aacacaatcatttgtgatactggttgagagaacttatg--aaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatga 37811874  T
Q  187 tagcttacgaaaaaagcttac 207  Q
    | ||||| ||||| |||||||    
T  37811873 tggcttatgaaaacagcttac 37811853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 51929794 - 51929843
Alignment:
Q  157 tttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    |||| ||| |||||||||| ||||||||||||||||| ||||| ||||||    
T  51929794 tttcggcttatttccataagctctctagaatagcttatgaaaacagctta 51929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 1662725 - 1662657
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    |||||| |||| |||||||||||||||||||||| || ||  || || |||||| |||| |||||||||    
T  1662725 ctatttagattggcttatttgagcttatctactagcataagtacatgcgagactatttgcgagagctta 1662657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 11893512 - 11893568
Alignment:
Q  55 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgttt 111  Q
    ||||||||||  ||||||||| ||||||||||| |||||  |||||||||| |||||    
T  11893512 tatttggattgacttatttgaacttatctactagcacaaatacttgtgagattgttt 11893568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 16980942 - 16980886
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||||| ||| |||| ||  |||||||||||| |||||||||||||||    
T  16980942 cttatttgaacttatataccaacataagtacttgtgagactatttgagagagcttat 16980886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 22416829 - 22416861
Alignment:
Q  54 ctatttggattagcttatttgagcttatctact 86  Q
    ||||||||||| |||||||||||||||||||||    
T  22416829 ctatttggattggcttatttgagcttatctact 22416861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 27807254 - 27807198
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||| |||||| ||| || || |||| |||||||||||||||||||||    
T  27807254 cttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttat 27807198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 29793629 - 29793669
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  29793629 cttatttgagcttatctactgacataaacacttgtgagact 29793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 34668811 - 34668740
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||| ||||||||||| |||| |||| |||  | |||||||||| |||||||  |||||||||    
T  34668811 ggcctatttggattggcttatttgagtttatgtactgacatgagcacttgtgag-ctgtttggaagagcttat 34668740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 37272529 - 37272581
Alignment:
Q  71 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||||||||||  |  || ||||||||||| |||||||||||||||||    
T  37272529 tttgagcttatctactggcttaagcacttgtgagattgtttgagagagcttat 37272581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 43371850 - 43371878
Alignment:
Q  95 cacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||||||||||||||    
T  43371850 cacttgtgagactgtttgagagagcttat 43371878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 22667558 - 22667486
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22667486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 22724197 - 22724125
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22724125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 50211884 - 50211818
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||||||| |||||||||||||||| || ||||||| ||||||||||||||| |||||    
T  50211884 tttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttat 50211818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 44014713 - 44014777
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 115  Q
    ||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||    
T  44014713 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgaga 44014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 27795938 - 27796000
Alignment:
Q  61 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||||||||||||||||||||  || || ||||||||| ||||||| |||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 11041160 - 11041213
Alignment:
Q  70 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||||||||||||| | || |||||||| ||||||||||||||||||||    
T  11041160 atttgagcttatctactaagataagcacttgtgggactgtttgagagagcttat 11041213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 24158430 - 24158503
Alignment:
Q  50 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||| |||||||||| |||||||| |||||||||||| ||| ||  |||||||| |||||||| ||||||||||    
T  24158430 aggcatatttggattggcttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttat 24158503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 48588797 - 48588684
Alignment:
Q  66 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagcta 165  Q
    |||||||||| ||||| |||| | |||| || |||||||| || |||||||||||||||||||  || || |  |||| ||| |||| ||||||||||||    
T  48588797 gcttatttgaacttatttacttatacaaacatttgtgagattgcttgagagagcttatataaa--caacttatgacatgttcttaaagtgttttcagcta 48588700  T
Q  166 atttccataacctctc 181  Q
    ||||||| || |||||    
T  48588699 atttccacaaactctc 48588684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 20210860 - 20210915
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||||||||| ||| || ||||||||||||||||||||||| |||||    
T  20210860 ttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttat 20210915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 21872216 - 21872271
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    ||||||||| ||||||||| |||||||||| ||| || ||||||||||||||||||    
T  21872216 tttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttg 21872271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 32663787 - 32663721
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| ||||||||||||||||||||  ||| |  ||||||||||||| |||||||||| ||||    
T  32663787 tttggattggcttatttgagcttatctaccgacaaatacacttgtgagactatttgagagagtttat 32663721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 41057310 - 41057244
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    |||||||||| ||| ||||||||||||||||||||   || || |||||||||||||||||| ||||    
T  41057310 ggcctatttgaattggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggaga 41057244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 1810102 - 1810061
Alignment:
Q  81 tctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  1810102 tctactaacataatcacttgtgagactatttgagagagctta 1810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 45590786 - 45590734
Alignment:
Q  71 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| ||||||||||| || || |||||||||||||||||| ||||||||||    
T  45590786 tttgaacttatctactagcataagcacttgtgagactgtttgggagagcttat 45590734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 5407369 - 5407440
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||| |||| ||||||||||||||||||||||| | | | |||||||||||| | ||||||  ||||||||    
T  5407369 ggcctgtttgcattagcttatttgagcttatctattgatataatcacttgtgatattgtttggcagagctta 5407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 41644369 - 41644513
Alignment:
Q  60 ggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgtttt 159  Q
    |||||| ||| ||||||||||||||||| || || |||||| || |||||||  |||| ||||||  |||||| ||    |||| ||| ||| |||||||    
T  41644369 ggattaacttctttgagcttatctactagcataagcacttgagacactgtttaggagaacttata--aaaacaacttgggacattttcataagctgtttt 41644466  T
Q  160 cagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    ||||| |||||| |||  ||||||  |||||||| ||||| ||||||    
T  41644467 cagcttatttccttaagatctctacgatagcttatgaaaacagctta 41644513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 2413600 - 2413666
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||  ||||||||| || ||||| || || |||||||||| || ||||||||||||||||||    
T  2413600 tttggatttacttatttgaactcatctattagcataatcacttgtaagtctgtttgagagagcttat 2413666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 14548680 - 14548782
Alignment:
Q  95 cacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagcttac 194  Q
    ||||||||||||||||||||||||||  ||| |||||| |  |  |||| ||  ||  |||||||||||| |||||||||| ||||| |||||| ||||     
T  14548680 cacttgtgagactgtttgagagagct--tatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctccagaataacttat 14548777  T
Q  195 gaaaa 199  Q
    |||||    
T  14548778 gaaaa 14548782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 27294497 - 27294432
Alignment:
Q  55 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 120  Q
    |||||| ||| ||||| ||||| ||||||| |  || || ||||||||||||||||||||||||||    
T  27294497 tatttgaattggcttacttgagtttatctattgtcataagcacttgtgagactgtttgagagagct 27294432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 49605772 - 49605833
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagag 118  Q
    |||||||||| ||||||||| |||||| ||| || ||  |||||||||| ||||||||||||    
T  49605772 tttggattagtttatttgagtttatcttctagcataagtacttgtgagagtgtttgagagag 49605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 1395791 - 1395723
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||||| |||  |||||||||||||||||  | ||  || |||||| |||||||||||||||||||||    
T  1395791 ctatttgtattgacttatttgagcttatcttatgacgtaagcacttgcgagactgtttgagagagctta 1395723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 33880480 - 33880544
Alignment:
Q  59 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||| ||||||||||||||||||| | ||| ||||| ||| || |||||||| |||| |||||    
T  33880480 tggattggcttatttgagcttatctattgacataatcatttgagaaactgtttgggagaacttat 33880544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 48528615 - 48528559
Alignment:
Q  149 taaactgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctt 205  Q
    ||||| |||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||    
T  48528615 taaacagttttcagcttatttctataaactctccagaatagcttatgaaaacagctt 48528559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 50016041 - 50015969
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| |||||||| |||||| | || ||||||| |  || || ||||||||||||||||||||||| |||||    
T  50016041 ggcctctttggattggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaacttat 50015969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 9700156 - 9700086
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 121  Q
    ||||| ||||||||| ||||||||||||||||||||| || || ||||||||||||| |||||||||||||    
T  9700156 ggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 16162915 - 16162851
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 115  Q
    ||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||    
T  16162915 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgaga 16162851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 43393685 - 43393760
Alignment:
Q  49 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||||||||||  ||||||| ||||||||||||  || || ||||| |||||||||||| |||||||||||    
T  43393685 aaggcctatttggattgacttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttata 43393760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 1664508 - 1664452
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  1664508 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 1664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 2487929 - 2487995
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| ||||||||||| | ||||||| ||| || |||||||||||||||||| |||| |||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttat 2487995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 6496812 - 6496878
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||  ||| |||||| ||||||||||||| ||||||||||| ||||||||| || |||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttat 6496878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 33553389 - 33553323
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||||||||||||||||||||||  |||| || |||||||||  |||||||  |||||||||    
T  33553389 tttggattagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 33553323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 10488612 - 10488559
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 110  Q
    |||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||    
T  10488612 tttggattggcttatttgagcttatcaactaacataaacacatgtgagactgtt 10488559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 24326167 - 24326114
Alignment:
Q  70 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||  || || |||||||||||||||||| ||||||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttat 24326114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 14926903 - 14926967
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 121  Q
    ||||||||  ||||||||| ||||| ||||  || || |||||||||||||||||||||||||||    
T  14926903 tttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 30277261 - 30277313
Alignment:
Q  154 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    ||||||||||| |||||||||| |||||||| |||||||| ||||| ||||||    
T  30277261 tgttttcagcttatttccataaactctctaggatagcttatgaaaacagctta 30277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 7918713 - 7918768
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||| | ||||||||||| || || |||||||||||||||||| ||||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttat 7918768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 8629261 - 8629199
Alignment:
Q  58 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 120  Q
    ||||||| |||||||| |||||| |||||  || || |||||||||||||| |||||||||||    
T  8629261 ttggatttgcttatttaagcttacctactggcataagcacttgtgagactgcttgagagagct 8629199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 10062062 - 10062128
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| |||||||||||||||||||||||||  | |||||  || ||| |||| ||||||||||    
T  10062062 tttggattggcttatttgagcttatctactaacatcaacacttacgaaactatttgggagagcttat 10062128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 44236739 - 44236797
Alignment:
Q  52 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 110  Q
    |||| ||||||||| |||||||||| |||||||||  || || ||||||||||||||||    
T  44236739 gcctgtttggattaccttatttgagtttatctactggcataagcacttgtgagactgtt 44236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 9130240 - 9130269
Alignment:
Q  57 tttggattagcttatttgagcttatctact 86  Q
    ||||||||||||||||||||||||||||||    
T  9130240 tttggattagcttatttgagcttatctact 9130269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 21130748 - 21130695
Alignment:
Q  70 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||| | || ||| ||  ||||||||||||||||||||||||||||    
T  21130748 atttgagcttatgtgctgacataaatacttgtgagactgtttgagagagcttat 21130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 43717849 - 43717882
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatcta 84  Q
    |||||||||||||| |||||||||||||||||||    
T  43717849 ggcctatttggattggcttatttgagcttatcta 43717882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 2606198 - 2606138
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    ||||||||  |||||| ||||||||||||| ||| ||||||| |||| |||||||| ||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatcactagtgaaactgtttgggaga 2606138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 8062383 - 8062331
Alignment:
Q  154 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    ||||||||||| |||||||||| |||||||  |||||||| ||||| ||||||    
T  8062383 tgttttcagcttatttccataatctctctaagatagcttatgaaaacagctta 8062331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 10075468 - 10075540
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| ||| ||||| |||||||||| |||||||||  || ||  ||||| |||||||||| |||||||||||    
T  10075468 ggcctgtttcgattaacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttat 10075540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 18331863 - 18331815
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgaga 105  Q
    ||||||||  ||||||||| |||||||||||||| || |||||||||||    
T  18331863 tttggattgacttatttgatcttatctactaacataagcacttgtgaga 18331815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 28769355 - 28769407
Alignment:
Q  154 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    ||||||||||| |||||||||| ||||| | ||||||||| ||||| ||||||    
T  28769355 tgttttcagcttatttccataaactctccaaaatagcttatgaaaacagctta 28769407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 30191056 - 30191128
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| |||| || |||||||||||| ||||||| |  || || ||||||| |||||||||| ||||||||||    
T  30191056 ggcctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttat 30191128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 31884872 - 31884916
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||||||||||||||| || || ||||||||||| ||||||    
T  31884872 ttatttgagcttatctactagcataagcacttgtgagagtgtttg 31884916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 43393625 - 43393661
Alignment:
Q  49 aaggcctatttggattagcttatttgagcttatctac 85  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  43393625 aaggcctatttcgattggcttatttgagcttatctac 43393661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 2996731 - 2996656
Alignment:
Q  48 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||| ||||||||||||||| ||||| || | ||| || ||||| |||||||||||||||||||||||    
T  2996731 taaggcctatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttat 2996656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 27123268 - 27123339
Alignment:
Q  52 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||| ||||||||| |||||||||||||||  |||| || ||  ||||||||||||||||||||||||||||    
T  27123268 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttat 27123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 18628486 - 18628540
Alignment:
Q  69 tatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttat 18628540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 4691986 - 4691939
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 115  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||    
T  4691986 ttatttgagcttatctactgtcacaatcacttgtgagactatttgaga 4691939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 19429391 - 19429457
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| |||||||||||||||| ||||   | || |||||||||||||||||| ||||||||||    
T  19429391 tttggattggcttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 25896935 - 25896866
Alignment:
Q  55 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||||  |||||||||| |||||||||| ||  | |||||||||||||||||  |||||||||||    
T  25896935 tatttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttata 25896866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 46860066 - 46860001
Alignment:
Q  58 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||  ||||||||| |||||||| | ||| || ||||||||| |||||||||||||||||||    
T  46860066 ttggattgacttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttat 46860001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 18512440 - 18512500
Alignment:
Q  61 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 121  Q
    ||||| |||||||||||||||||||| ||| || |||||||||||||  |||| |||||||    
T  18512440 gattaacttatttgagcttatctactgacataaacacttgtgagactagttgaaagagctt 18512500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 4072016 - 4071961
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||| ||| ||| | || |||||||||||||||||||||||||||||    
T  4072016 ttatttgaggttaactattaatataagcacttgtgagactgtttgagagagcttat 4071961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 17822776 - 17822815
Alignment:
Q  47 ttaaggcctatttggattagcttatttgagcttatctact 86  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  17822776 ttaaggcctgtttggattaacttatttgagcttatctact 17822815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 21157915 - 21157852
Alignment:
Q  59 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    |||||| ||||||||||||| ||||||| ||| || ||||||| ||||||||||  ||||||||    
T  21157915 tggatttgcttatttgagctcatctactgacataagcacttgtaagactgtttggaagagctta 21157852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 1017176 - 1017122
Alignment:
Q  58 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||  |||||||||||| ||||||| ||| || ||||||||||||||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 17975249 - 17975323
Alignment:
Q  48 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||| || ||||||||  ||||||||||||||||||| ||||||| ||||||| | ||| ||||  ||||||||    
T  17975249 taagggctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 17975323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 22845623 - 22845657
Alignment:
Q  53 cctatttggattagcttatttgagcttatctacta 87  Q
    |||||||||||| ||||||||||||||||||||||    
T  22845623 cctatttggattggcttatttgagcttatctacta 22845657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 56186819 - 56186869
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    ||||||||| |||||| ||| ||||||||||||| || |||||||||||||    
T  56186819 tttggattaacttattcgagtttatctactaacataaacacttgtgagact 56186869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 2977897 - 2977962
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||||||| |||||||||||| ||||| |  || || ||| ||||||||||||| ||||||||||    
T  2977897 tttggattaacttatttgagctgatctagtggcataagcacgtgtgagactgtttaagagagctta 2977962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 19394864 - 19394897
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatcta 84  Q
    |||||||||||||| |||||||||||||||||||    
T  19394864 ggcctatttggattggcttatttgagcttatcta 19394897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 32420976 - 32421029
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    |||||||||||  |||||||||||||| |||||| || || |||||||||||||    
T  32420976 ctatttggattgacttatttgagcttacctactagcataagcacttgtgagact 32421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 45104307 - 45104344
Alignment:
Q  47 ttaaggcctatttggattagcttatttgagcttatcta 84  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  45104307 ttaaggcctgtttggattagcttatttgagcatatcta 45104344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 56007814 - 56007765
Alignment:
Q  71 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 120  Q
    ||||| ||||||||||  || |||||||||| ||||||||||||||||||    
T  56007814 tttgaacttatctactggcataatcacttgtaagactgtttgagagagct 56007765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 33534100 - 33534156
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||| | ||| ||  |||||||||| | |||||||||||||||    
T  33534100 cttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttat 33534156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 43824337 - 43824285
Alignment:
Q  154 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 206  Q
    ||||||||||| |||||||||| || || || ||| |||||||||||||||||    
T  43824337 tgttttcagcttatttccataagctttccaggataacttacgaaaaaagctta 43824285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 50298653 - 50298609
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||| |||||||||||| ||| || ||||||||||||||||||    
T  50298653 ttattttagcttatctactgacataagcacttgtgagactgtttg 50298609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 28803439 - 28803511
Alignment:
Q  45 atttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    ||||||||||||||||||||  |||||||||||||||||||   || || ||| |||||||||||||||||||    
T  28803439 atttaaggcctatttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagaga 28803511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 11514045 - 11513979
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| | ||||||||| |||||||||| || || ||||||||||||||||| |||||||||||    
T  11514045 tttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttat 11513979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 41170759 - 41170704
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||||||| ||||    
T  41170759 tttggattggcttatttgagtttatctactaacataaacacttgtgagactatttg 41170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 11063342 - 11063292
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    ||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  11063342 tttggattagcttatttgaacttatctactaacacaagcatttgcgagact 11063292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 22878247 - 22878181
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||  |||||||||||||||| ||| ||| || |||||||||||||||||| |||| |||||    
T  22878247 tttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttat 22878181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 37474921 - 37474848
Alignment:
Q  49 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||||||||  ||| ||||||| | ||| || ||||| ||||||| |||||||||||||||    
T  37474921 aaggcctatttggattagcttatccgagtttatcta-ttacataaacacttatgagactctttgagagagcttat 37474848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 43456628 - 43456743
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 156  Q
    ||||||||  ||||||||| ||||| |||| ||| || ||||||| ||||||||||| ||||||| |   |||||| ||||  |||| | | ||||||||    
T  43456628 tttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtg--aaaacaactcatgacatgtccataaactgt 43456725  T
Q  157 tttcagctaatttccata 174  Q
    |||||||| |||||||||    
T  43456726 tttcagcttatttccata 43456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 13867015 - 13866962
Alignment:
Q  69 tatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||||||||||||||||  || || ||||||||||||||||||||||| ||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 6548047 - 6547972
Alignment:
Q  48 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| || ||||||||  ||||||  ||||||||||||| || ||  ||||||||||||||||||| ||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgagactgtttgagggagcttat 6547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 15370236 - 15370299
Alignment:
Q  49 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    ||||||| ||||||||  ||||||||||||||||||||  || || || |||||||||||||||    
T  15370236 aaggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 40944062 - 40944007
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||||||||||||||| ||||||| | ||| || ||||||||| ||||||||    
T  40944062 tttggattagcttatttgagtttatctaatgacataagcacttgtgaaactgtttg 40944007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 3078520 - 3078594
Alignment:
Q  48 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||| || ||||||||  ||||||||||||||||||| ||||||| ||||||| | ||| ||||  ||||||||    
T  3078520 taagggctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 3078594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 4350839 - 4350773
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| |||||||||||||| |||||| ||| || |||||  |||| ||||||||||| |||||    
T  4350839 tttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttat 4350773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 25609936 - 25609894
Alignment:
Q  66 gcttatttgagcttatctactaacacaatcacttgtgagactg 108  Q
    ||||||||||||||||||||||||| ||  |||||||||||||    
T  25609936 gcttatttgagcttatctactaacataagaacttgtgagactg 25609894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 33981270 - 33981220
Alignment:
Q  59 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgt 109  Q
    |||||||||||||||||||||| |||||| |  || |||||||||||||||    
T  33981270 tggattagcttatttgagcttacctactagcttaagcacttgtgagactgt 33981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 40158870 - 40158816
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactg 108  Q
    ||||||||||| |||||||||||| |||||||| ||| ||  |||||||||||||    
T  40158870 ctatttggattggcttatttgagcatatctactgacataagaacttgtgagactg 40158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 9996877 - 9996820
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    |||||||||||||||| |||| || ||  ||||||||||||| ||| |||||||||||    
T  9996877 cttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttata 9996820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 30990360 - 30990393
Alignment:
Q  57 tttggattagcttatttgagcttatctactaaca 90  Q
    |||||||| |||||||||||||||||||||||||    
T  30990360 tttggattggcttatttgagcttatctactaaca 30990393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 32364642 - 32364719
Alignment:
Q  47 ttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||| ||||||||||||  ||||||||||  ||||||||| || || || |||||| | |||||| |||||||||||    
T  32364642 ttaagccctatttggattgacttatttgagaatatctactatcataagcatttgtgaaattgtttgggagagcttata 32364719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 42852621 - 42852678
Alignment:
Q  55 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    |||||||||| |||||||||| ||||||| ||  || || ||||||||||||||||||    
T  42852621 tatttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttg 42852678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 1647291 - 1647251
Alignment:
Q  153 ctgttttcagctaatttccataacctctctagaatagctta 193  Q
    |||||||||||| |||||||||| ||||||| |||||||||    
T  1647291 ctgttttcagcttatttccataagctctctataatagctta 1647251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 5045084 - 5045148
Alignment:
Q  52 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagag 116  Q
    |||| |||| |||||| ||||||| ||||| |||| |||  | ||||||||||||||||||||||    
T  5045084 gcctgtttgaattagcgtatttgaacttatttactgacaacaacacttgtgagactgtttgagag 5045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 9478438 - 9478382
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||||||||| |||| ||  ||||||| ||||||||||||||| ||||    
T  9478438 cttatttgaacttatctaccaacataagtacttgtgtgactgtttgagagagtttat 9478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 40759315 - 40759259
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    ||||| ||||||||  |||||||||||||||||| | ||| || |||||||||||||    
T  40759315 ggcctgtttggattgccttatttgagcttatctattgacataagcacttgtgagact 40759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 43142011 - 43141955
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||||||||| || || |||||| || |||||| || ||||||    
T  43142011 cttatttgagcttatctactaacataagcaattgtgaaacagtttgacagcgcttat 43141955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 2460067 - 2460138
Alignment:
Q  52 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||| ||||||||| |||||||||||||||  |||| || ||  ||||||||||||||||||||||||||||    
T  2460067 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttat 2460138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 35070388 - 35070448
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 117  Q
    ||||||||  |||||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  35070388 tttggattttcttatttgagcttatctactaacataagcacttgtgggactgtttgggaga 35070448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 24973945 - 24974015
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    |||||||||||||||||||||| ||||||| || ||| || ||||||| ||| ||||||  ||||||||||    
T  24973945 ctatttggattagcttatttgaacttatctgctgacataagcacttgtaagattgtttggtagagcttata 24974015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 34538159 - 34538273
Alignment:
Q  77 cttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataac 176  Q
    |||||||||| | | || ||||||||||||| ||||||||| ||  ||||||||||||| || |||| | | |||||| ||||||||| ||||  | ||     
T  34538159 cttatctactcatataagcacttgtgagactatttgagagatct--tataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaa 34538256  T
Q  177 ctctctagaatagctta 193  Q
    |||||||| ||||||||    
T  34538257 ctctctaggatagctta 34538273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 8420129 - 8420185
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||||||||||| | ||| || |||||||||||||||| | |||||||||||    
T  8420129 ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttata 8420185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 12111122 - 12111066
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    ||||||||||||||  ||||||||||||||||||||| || || |||||| ||||||    
T  12111122 ggcctatttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 1432288 - 1432221
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    |||||||| | |||||| |||||||||||| ||| || || |||| |||||||||||||||| |||||    
T  1432288 tttggattggtttattttagcttatctactcacataagcaattgttagactgtttgagagagtttata 1432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 9667916 - 9667955
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagac 106  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  9667916 cttatttgagcttatctcctaacacaagcacttgtgagac 9667955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 27894182 - 27894116
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||| ||||||||||| ||||  ||| ||  ||||||||||||||||||  ||||||||    
T  27894182 tttggattagctcatttgagcttacctacggacataagtacttgtgagactgtttgaacgagcttat 27894116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 2457096 - 2457035
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    ||||| |||||||| ||||||||||| ||||||||  ||| || ||||||| ||||||||||    
T  2457096 ggcctgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgtttg 2457035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 10353705 - 10353746
Alignment:
Q  80 atctactaacacaatcacttgtgagactgtttgagagagctt 121  Q
    ||||||||||| || |||||||||||||||||| ||||||||    
T  10353705 atctactaacataagcacttgtgagactgtttgggagagctt 10353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 29957940 - 29957977
Alignment:
Q  156 ttttcagctaatttccataacctctctagaatagctta 193  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  29957940 ttttcagcttatttccataagctctctagaatagctta 29957977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 32171297 - 32171370
Alignment:
Q  50 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||| ||||||||  ||||||| ||||||  || | ||| || |||||| ||||||||||||||||||||||    
T  32171297 aggcctgtttggattgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttat 32171370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 3155311 - 3155255
Alignment:
Q  70 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatata 126  Q
    ||||||||||||||||  ||| ||||||||| |||||  ||||| ||||||||||||    
T  3155311 atttgagcttatctacagacataatcacttgagagaccatttgaaagagcttatata 3155255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 3738240 - 3738196
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgttt 111  Q
    |||||||||| |||||||||| || || |||||||||||||||||    
T  3738240 cttatttgagtttatctactagcataagcacttgtgagactgttt 3738196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 6742950 - 6742910
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagact 107  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  6742950 cttatttgagcttacctactagcataatcacttgtgagact 6742910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 12811419 - 12811391
Alignment:
Q  51 ggcctatttggattagcttatttgagctt 79  Q
    |||||||||||||||||||||||||||||    
T  12811419 ggcctatttggattagcttatttgagctt 12811391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 30865622 - 30865566
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||||  ||||| || ||||||| |||| |||| |||||||||||    
T  30865622 cttatttgagcttatctgttaacataaacacttgttagacagtttaagagagcttat 30865566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 32917336 - 32917280
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||| ||||||| ||||||  | || |||||||||||||||||| ||||||||||    
T  32917336 cttattagagcttacctactagaataaacacttgtgagactgtttgggagagcttat 32917280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 32997627 - 32997591
Alignment:
Q  95 cacttgtgagactgtttgagagagcttatataaaaac 131  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32997627 cacttgtgagaccgtttgagagagcttataaaaaaac 32997591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 25720338 - 25720405
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    |||| ||||||||||||||| |||||||||  || || ||||||||||||||| ||||||||||||||    
T  25720338 tttgaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttata 25720405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 10771806 - 10771868
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagag 116  Q
    ||||||||||| |||||||||||||||||||||  || || ||||||||||| ||||||||||    
T  10771806 ctatttggattggcttatttgagcttatctactggcataagcacttgtgagattgtttgagag 10771868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 7550433 - 7550505
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| ||| |||| | ||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||||||    
T  7550433 ggcctgttttgattggtttatttgagcttatccactgacataattacttgtgagactctttgagagagcttat 7550505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 8090075 - 8090019
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| ||||||||||||||||| |||| | |||||| |||||||||||||||    
T  8090075 cttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttat 8090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 34975498 - 34975450
Alignment:
Q  72 ttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 120  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  34975498 ttgagcttatctactaacataatcacttatgagactgtttgaaagagct 34975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 11615572 - 11615619
Alignment:
Q  54 ctatttggattagcttatttgagcttatctactaacacaatcacttgt 101  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||    
T  11615572 ctatttggattggcttatttgagcttatctactaacataaacacttgt 11615619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 40335786 - 40335849
Alignment:
Q  49 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 112  Q
    ||||||| ||||||||  |||||||||| |||||||||  ||||| ||||||||||||||||||    
T  40335786 aaggcctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttg 40335849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 4855834 - 4855777
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||||||||| || | ||  || ||||||||||||||||||||||||||||||    
T  4855834 cttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagcttata 4855777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 39257315 - 39257380
Alignment:
Q  57 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    |||||| | |||||||| |||||||||||||||| || ||||||||||||||| || || ||||||    
T  39257315 tttggactggcttatttaagcttatctactaacataagcacttgtgagactgtgtgcgaaagctta 39257380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 12407661 - 12407717
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||||| |||||||| | ||| || |||||||||||| ||||||||||||||||    
T  12407661 cttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttat 12407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 37611147 - 37611276
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaat 167  Q
    |||||||| ||||||||||  |||||  |||||||||| ||||||||||||||  ||| |||||| ||    |||| ||| ||| |||||||||| | ||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagct--tatgaaaacaacttgtgacatgttcataagctgttttcaggttat 37611244  T
Q  168 ttccataacctctctagaatagcttacgaaaa 199  Q
    |||||||| ||||| |  |||||||| |||||    
T  37611245 ttccataagctctccaagatagcttatgaaaa 37611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 37787877 - 37788006
Alignment:
Q  68 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaat 167  Q
    |||||||| ||||||||||  |||||  |||||||||| ||||||||||||||  ||| |||||| ||    |||| ||| ||| |||||||||| | ||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagct--tatgaaaacaacttgtgacatgttcataagctgttttcaggttat 37787974  T
Q  168 ttccataacctctctagaatagcttacgaaaa 199  Q
    |||||||| ||||| |  |||||||| |||||    
T  37787975 ttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 42034216 - 42034153
Alignment:
Q  50 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttga 113  Q
    |||||| |||||||||||||||||||||||| ||||| ||| || ||||| ||  |||||||||    
T  42034216 aggcctgtttggattagcttatttgagcttacctactgacataagcacttatgcaactgtttga 42034153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 25705570 - 25705628
Alignment:
Q  47 ttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgaga 105  Q
    |||| |||| |||||||||  |||||||| |||||||||||||| || |||||||||||    
T  25705570 ttaaagcctgtttggattaaattatttgaacttatctactaacataagcacttgtgaga 25705628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 14980648 - 14980591
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 124  Q
    ||||||||||||||||||||  || || ||||   |||||||||||||||||||||||    
T  14980648 cttatttgagcttatctactggcataagcactatagagactgtttgagagagcttata 14980591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 17259351 - 17259302
Alignment:
Q  72 ttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 121  Q
    ||||||||||||||||||| || |||||||||||||  ||||| ||||||    
T  17259351 ttgagcttatctactaacataagcacttgtgagacttgttgagtgagctt 17259302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 31723958 - 31723889
Alignment:
Q  53 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 122  Q
    ||||||||||||  ||||||||||||||| ||||| || || ||||| ||||||| ||||  ||||||||    
T  31723958 cctatttggattgacttatttgagcttatgtactagcataaacacttatgagactatttgtaagagctta 31723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 1084070 - 1084126
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||| |||| |||| ||| || ||||||||| |||||||||||||| ||||    
T  1084070 cttatttgagtttatttactgacataagcacttgtgaaactgtttgagagagtttat 1084126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 6938648 - 6938684
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctacta 87  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  6938648 ggcctgtttggattaggttatttgagcttatctacta 6938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 7674800 - 7674768
Alignment:
Q  53 cctatttggattagcttatttgagcttatctac 85  Q
    |||||||||||| ||||||||||||||||||||    
T  7674800 cctatttggattggcttatttgagcttatctac 7674768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 13781812 - 13781860
Alignment:
Q  73 tgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 121  Q
    |||||||||||||||||| ||  |||||||||||||||||  |||||||    
T  13781812 tgagcttatctactaacataagtacttgtgagactgtttggtagagctt 13781860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 14599287 - 14599359
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||| ||||||||   |||||||| ||||| ||||| || || ||||||| ||| |||||||||||||||||    
T  14599287 ggcctgtttggattcagttatttgaacttatttactagcataaacacttgtaagattgtttgagagagcttat 14599359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 14706201 - 14706253
Alignment:
Q  53 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgaga 105  Q
    ||||||||||||  |||||||||||||| ||||| ||| || |||||||||||    
T  14706201 cctatttggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 21782587 - 21782643
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||  |||||||||  || || |||||||||| ||||||||||||||||||    
T  21782587 cttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagcttat 21782643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 32849317 - 32849261
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| |||| |||||    
T  32849317 cttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttat 32849261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 37969012 - 37968960
Alignment:
Q  71 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||||||||| ||| ||  |||||||| ||||||||||||| |||||    
T  37969012 tttgagcttatctactgacataagtacttgtgaaactgtttgagagatcttat 37968960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 6949 - 6893
Alignment:
Q  67 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  6949 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 58903 - 58865
Alignment:
Q  45 atttaaggcctatttggattagcttatttgagcttatct 83  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  58903 atttagggcctatttggattagcttatttgagcttatct 58865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 9692 - 9761
Alignment:
Q  50 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagc 119  Q
    |||||||||| ||||   ||||||||| ||||||||||||| ||  ||||||||||||||||| ||||||    
T  9692 aggcctatttagattgatttatttgagtttatctactaacataaatacttgtgagactgtttgggagagc 9761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 159888 - 159940
Alignment:
Q  51 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtga 103  Q
    ||||| |||||||| ||||||||||||||||||||||| | || |||||||||    
T  159888 ggcctgtttggattggcttatttgagcttatctactaatataaacacttgtga 159940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 35775 - 35819
Alignment:
Q  79 tatctactaacacaatcacttgtgagactgtttgagagagcttat 123  Q
    |||||||| ||| ||||||| || |||||||||||||||||||||    
T  35775 tatctactgacataatcactcgttagactgtttgagagagcttat 35819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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