View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_2 (Length: 558)
Name: NF18622_low_2
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Original strand, 29146841 - 29147355
Alignment:
| Q |
20 |
atctcaatatagtgttaatata--gtgcagcacaagtgttaaacatttaggtttcttatttgatcgatgtcggtgcctataaaaaatatgtgttatgaga |
117 |
Q |
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| T |
29146841 |
atctcaatatagtgttaatatatagtgcagcacaagtgttaaa----------tcttatttgatcgatgtcgatacctataaaaaacttgtgttatcaga |
29146930 |
T |
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| Q |
118 |
ggtcaagttttaataggcactgacatcgctcaatcaccaattatcatatgtacatctttaaatttagttgcgattaactcaaatattttcataatatttg |
217 |
Q |
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| T |
29146931 |
gatcaaattttaataggcactgacatcgctcaatccctaattatcatatgtacatctttaaatttagtcgcgattaactcaaatattttcataatatttg |
29147030 |
T |
|
| Q |
218 |
ataacttaacaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatt |
317 |
Q |
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| T |
29147031 |
ataacttaacaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatt |
29147130 |
T |
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| Q |
318 |
tgcacattcttaacctctataatattcaggtatctaaattactttaagataaatttaatttagttacataataaataaactaatctgacatatatagagt |
417 |
Q |
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| T |
29147131 |
tgcacattcttaacctctataatattcaggtatctaaattactttaagataaatttaatttagttacataataaataaactaatctgacatatatagagt |
29147230 |
T |
|
| Q |
418 |
catagatagatacataaaattctgaat--aaattactacagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctatta |
515 |
Q |
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| T |
29147231 |
catagatagatacataaaattctgaataaaaattactacagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctatta |
29147330 |
T |
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| Q |
516 |
tgtgtgttggtggagcattagcaac |
540 |
Q |
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| T |
29147331 |
tgtgtgttggtggagcattagcaac |
29147355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 454 - 540
Target Start/End: Complemental strand, 29224418 - 29224332
Alignment:
| Q |
454 |
cagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaac |
540 |
Q |
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| T |
29224418 |
cagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaac |
29224332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 29224615 - 29224492
Alignment:
| Q |
227 |
caggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattc |
326 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| | |||||| |
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| T |
29224615 |
caggatgacaatggctctagggttattctattacggtcttcgagacacaactgctacttattccgtcaactttctcaacttggttcctatattgacattc |
29224516 |
T |
|
| Q |
327 |
ttaacctctataatattcaggtat |
350 |
Q |
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| T |
29224515 |
ttaacttctatcatatgcaggtat |
29224492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 38852170 - 38852070
Alignment:
| Q |
258 |
tatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattcttaacctctataatattcaggtatctaaatt |
357 |
Q |
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|||||| ||||||||||| |||| | ||| | |||||||||||||||| | ||||| ||||||||||| ||| | || ||||||||||| |||||| |
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| T |
38852170 |
tatggtattcgagacacatctgccacatatgctctcaattttctcaacttaattcctatctgcacattcttgaccgccatcttattcaggtatttaaatt |
38852071 |
T |
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| Q |
358 |
a |
358 |
Q |
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| T |
38852070 |
a |
38852070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 5304319 - 5304157
Alignment:
| Q |
226 |
acaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacatt |
325 |
Q |
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||||||||||||||||| | || ||||||||||||||||| ||||||||| ||||| ||||| | ||||| |||||||||||||| || |||||||| || |
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| T |
5304319 |
acaggatgacaatggcttttggattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcacctt |
5304220 |
T |
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| Q |
326 |
cttaacctctataatattcaggtatctaaattactttaagataaatttaatttagttacataa |
388 |
Q |
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||| || ||||| |||| |||||||| |||||| || |||| | ||| ||||||| ||||||| |
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| T |
5304219 |
cttgacttctatcatatgcaggtatccaaattagttaaagacacattaaatttagctacataa |
5304157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 537
Target Start/End: Complemental strand, 5304107 - 5304019
Alignment:
| Q |
449 |
tactacagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagc |
537 |
Q |
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|||| ||||||||||||||||| ||| ||||||||| ||||||||| ||| |||| || || ||| |||||||||||||||||||||| |
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| T |
5304107 |
tactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagc |
5304019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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