View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_3 (Length: 507)
Name: NF18622_low_3
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 31748686 - 31749172
Alignment:
| Q |
1 |
ccagtgaaactatacaattaccatcaccatcttttaacatatcacaactacagaagagcttctctcgaagaggtctgtcgatggaagacttggtagcttt |
100 |
Q |
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|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31748686 |
ccagtgaaaccatacagttaccgtcaccatcttttaacatatcacaactacagaagagcttctctcaaagaggtctgtcgatggaagacttggtagcttt |
31748785 |
T |
|
| Q |
101 |
gtcaggtaaaaatattacaagcccaaaacttcaccatttactaaaaataaatttaatcagctttgtctggtaatgaaatttgctccggaataccaataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31748786 |
gtcaggtaaaaatattacaagcccaaaacttcaccatttactaaaaataaatttaatcagctttgtctgggaatgaaatttgctccggaataccaataaa |
31748885 |
T |
|
| Q |
201 |
tctcatattacttgaatatcaaggcttaggtgctttacaaacactcacactccacaatccaacaaaacaccttttaactaacgacaaaaccatgaagact |
300 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31748886 |
tctcatattacttgaaaatcgaggcttaggtactttacaaacactcacactccacaatccaacaaaacaccttttaactaacgacaaaaccatgaagact |
31748985 |
T |
|
| Q |
301 |
tacacatgagacccaaagtggacaatacctcaaaaaggcaatgtagtggacttgaggttgaaacgttggtgtcgtctatgggaatcgagggcctaagcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31748986 |
tacacatgagacccaaagtggacaatacctcaaaaaggcaatgtagtggacttgaggttgaaacgttggtgtcgtctatgggaatcaagggcctaagcca |
31749085 |
T |
|
| Q |
401 |
gtacgcacaagggatgatagaccctttctgcttgaccaggatattgttccaatacactaaaaagtcccacgttatttgggaatcgag |
487 |
Q |
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| T |
31749086 |
gtacgcacaagggatgatagaccctttctgcttgaccaggatattgttccaatacactaaaaagtcccacgttacttgggaatcgag |
31749172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9058319 - 9058211
Alignment:
| Q |
1 |
ccagtgaaactatacaattaccatcaccatcttttaacatatcacaactacagaagagcttctctcgaagaggtctgtcgatggaagacttggtagcttt |
100 |
Q |
| |
|
|||||||||| | |||||||||| ||||| | || ||||||||||| || ||| | |||||||| | ||||| |||| ||||||||||||||||| | |
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| T |
9058319 |
ccagtgaaacaagacaattaccagcaccaacattcaacatatcacagctgcagcaaagcttctcacaaagagcattgtctgtggaagacttggtagctct |
9058220 |
T |
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| Q |
101 |
gtcaggtaa |
109 |
Q |
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||||||||| |
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| T |
9058219 |
gtcaggtaa |
9058211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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