View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_8 (Length: 397)
Name: NF18622_low_8
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 4900057 - 4900436
Alignment:
| Q |
7 |
ctgaaatgaacaatgaggagttcaagaataagtttatttcgaaggtgaagaagccaattagcaagagggccagtaacttgcatgtcaaggttgaatcctg |
106 |
Q |
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| T |
4900057 |
ctgatatgagcaatgaagagttcaagaataagtttatttcgaaggtgaagaagccaattagcaagagggccagtaacttgcatgtcaaggttgaatcctg |
4900156 |
T |
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| Q |
107 |
tgatgatgcaccttactctttagattggagaaagaaaggagttgtgactggtgtgaaggatcaaggcaactgtggtaagcttctatattttatgcacttt |
206 |
Q |
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| T |
4900157 |
tgatgatgcaccttactctttagattggagaaagaaaggagttgtgactggtgtgaaggatcaaggcaactgtggtaagcttctatattttatgcacttt |
4900256 |
T |
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| Q |
207 |
aaaag--tttggttatttatattttagaactcacaactaatttccctttatactcttttgaatctcaattttgcatattaag---nnnnnnnnnnctgat |
301 |
Q |
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| T |
4900257 |
aaaagtttttggttatttatattttagaactcacaactaatttccctttatactcttttgaatctcaattttgcatattaagaaaaaaaaaaaaactgat |
4900356 |
T |
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| Q |
302 |
tttgtaggtagttgttggtcattctcttccactggagcaatagaaggagtaaatgcaatagtgacaggggaccttataag |
381 |
Q |
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| T |
4900357 |
tttgtaggtagttgttggtcattctcttccactggagcaatagaaggagtaaatgcaatagtgacaggggaccttataag |
4900436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 4947451 - 4947833
Alignment:
| Q |
7 |
ctgaaatgaacaatgaggagttcaagaataagtttatttcgaaggtgaa-gaagccaattagcaa--gagggccagtaacttgcatgtcaaggttgaatc |
103 |
Q |
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| T |
4947451 |
ctgatatgagcaatgaagagttcaagaataagtttatttcgaaggtgaacgaagccaattagcaaaggagggccagtaacttgcatgtcaaggttgaatc |
4947550 |
T |
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| Q |
104 |
ctgtgatgatgcaccttactctttagattggagaaagaaaggagttgtgactggtgtgaaggatcaaggcaactgtggtaagcttcta-tattttatgca |
202 |
Q |
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| T |
4947551 |
ctgtgatgatgcaccttactctttagattggagaaagaaaggagttgtgactggtgtgaaggatcaaggcaactgtggtaagcttctattattttatgca |
4947650 |
T |
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| Q |
203 |
ctttaaaag--tttggttatttatattttagaactcacaactaatttccctttatactcttttgaatctcaattttgcatattaa--gnnnnnnnnnnct |
298 |
Q |
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| T |
4947651 |
ctttaaaagtttttggttatttatattttagaactcacaactaatttccctttatactcttttgaatctcaattttgcatattaaagaaaaaaaaaaact |
4947750 |
T |
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| Q |
299 |
gattttgtaggtagttgttggtcattctcttccactggagcaatagaaggagtaaatgcaatagtgacaggggaccttataag |
381 |
Q |
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| T |
4947751 |
gattttgtaggtagttgttggtcattctcttccactggagcaatagaaggagtaaatgcaatagtgacaggggaccttataag |
4947833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 34312548 - 34312492
Alignment:
| Q |
129 |
gattggagaaagaaaggagttgtgactggtgtgaaggatcaaggcaactgtggtaag |
185 |
Q |
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| T |
34312548 |
gattggagaaagaaaggtgctgtcactgatgtcaaggatcaaggccaatgtggtaag |
34312492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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