View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18622_low_9 (Length: 389)
Name: NF18622_low_9
Description: NF18622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18622_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 28503182 - 28502912
Alignment:
| Q |
16 |
ataggaataggcttgaaaacaaccaaacatacataaatgcacacaccaacatagagaggcaccagcagaggtaaagaatgataacaataattggcaaagg |
115 |
Q |
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| T |
28503182 |
ataggaataggcttgaaaacaaccaaacacacataaatgcacacaccaacatagagaggcaccagcagaggtaaagaatgataacaataattggcaaagg |
28503083 |
T |
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| Q |
116 |
agaatatcaagagaagagaaagaagggtattggaagaataaggggtccctgtttctaacttaagatacaaatccctctactgtttccttttgtctacttt |
215 |
Q |
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| T |
28503082 |
agaatatcaagagaagagaaagaagggtattggaagaataaggggtccctgtttctaacttaagatacaaatccctctactgtttccttttgtctacttt |
28502983 |
T |
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| Q |
216 |
ccatatgacaacaaaattggagtggtgccctctgcattgccacttaccctccacattaggccaccctcata |
286 |
Q |
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| T |
28502982 |
ccatatgacaacaaaattggagtggtgccctctgcattgccacttaccctccaaattaggccaccctcata |
28502912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 28502861 - 28502825
Alignment:
| Q |
337 |
agattccacacattaaatgtgtgacgcactaatcttg |
373 |
Q |
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| T |
28502861 |
agattccacacattaaatgtgtgacgcactaatcttg |
28502825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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