View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_10 (Length: 416)
Name: NF18623_high_10
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 45447665 - 45447309
Alignment:
| Q |
11 |
cttttttatgtttatatttattgtttttcatatccttggattaccaaataattctcgtattcaactnnnnnnnngcagttacgagaaggnnnnnnnggca |
110 |
Q |
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| T |
45447665 |
cttttttatatttatatttattgtttttcatatccttggattaccaaataattctcgtattcaactaaaaaaaagcagttacgagaaggaaaaaaaggca |
45447566 |
T |
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| Q |
111 |
gttatgagaatcgaactcgtgaccagatactcaactgcaaaaaaccttaccatttcgctgtgatagacatataacgtgagccttgctctaacctggctaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
45447565 |
gttatgagaatcgaactcgtgaccagatactcaactgcaaaaaaccttaccatttcgctgtgatagacatataacgttagccttgctctaacctgcctaa |
45447466 |
T |
|
| Q |
211 |
gagtggccacgactgttgaaaaaccctaactcccttcccgcgcctttctcttcaatcttctccgccgtctctctccccagaaaatggtttcacagtgggg |
310 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447465 |
gagtggccacgactgctgaaaaaccctaactcccttcccgcgcctttctcttcaatcttctccgccgtctctctccccagaaaatggtttcacagtgggg |
45447366 |
T |
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| Q |
311 |
aatcaagttcgccgttcatctcatcaccgcccatttcggcaaaatcgtcgccgtatg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447365 |
aatcaagttcgccgttcatctcatcaccgcccatttcggcaaaatcgtcgccgtatg |
45447309 |
T |
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