View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_17 (Length: 343)
Name: NF18623_high_17
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 32 - 328
Target Start/End: Complemental strand, 42716826 - 42716531
Alignment:
| Q |
32 |
actattacagttaccattttactgaattagaatattctattagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataact |
131 |
Q |
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| T |
42716826 |
actattacagttaccattttactgaattagaatattctattagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataact |
42716727 |
T |
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| Q |
132 |
ggtgctgatgccaaatatgataatgcatcttccaaagacgcgtaagaatactatcnnnnnnnactgaatttaccctcttaagaaatttttatctagtgga |
231 |
Q |
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| T |
42716726 |
ggtgctgatgtcaaatatgataatgcatcttccaaagacgcgtaagaatactatctttttttactgaatttaccctcttaagaaatttttatctagtgga |
42716627 |
T |
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| Q |
232 |
aattttttcctaattaaaatatactaaatcatttgtagcctaaattgcacgggtggaactcttgatccacaaaaggctaaggggaaaatattggttt |
328 |
Q |
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| T |
42716626 |
aa-tttttcctaattaaaatatactaaatcatttgtagcctaaattgcgagggtggaactcttgatccacaaaaggctaaggggaaaatattggttt |
42716531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 42762236 - 42762155
Alignment:
| Q |
71 |
ttagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgctgatgccaaatatgat |
152 |
Q |
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| T |
42762236 |
ttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgat |
42762155 |
T |
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