View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18623_high_2 (Length: 654)

Name: NF18623_high_2
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18623_high_2
NF18623_high_2
[»] chr1 (1 HSPs)
chr1 (1-639)||(8446826-8447470)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 8447470 - 8446826
Alignment:
Q  1 aatccaattccaactcatctctctcaacatgtccaaagctgaacacagaaaacctgatttcctcaaaatccatgtaataataataat---------tcat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  8447470 aatccaattccaactcatctctctcaacatgtccaaagctgaacacagaaaacctgatttcctcaaaatccatgtaataataataataataataattcat 8447371  T
Q  92 acacttcacttcttctaccttgttgttatgttagtcatcatcataattttc-acattgcttgtttaattttcagccatttggtcaagtacctgcatatca 190  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447370 acacttcacttcttctaccttgttgtta-----gtcatcatcataatttttgacattgcttgtttaattttcagccatttggtcaagtacctgcatatca 8447276  T
Q  191 agatcacgacatttctctcttcggtaagtaattcattcattaatt-aatcagttgcttcttacttaattaataatcaattagtattttcaattttaattg 289  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8447275 agatcacgacatttctctcttcggtaagtaattcattaattaatttaatcagttgcttcttacttaattaataatcaattagtattttcaatttaaattg 8447176  T
Q  290 tataacatcagagtcaagagctatatgtcggtacgtatgtgagaaaaatagagagaaagggaacaaacaactgtatgatacaaatccattggcaaaggct 389  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8447175 tataacatcagagtcaagagcgatatgtcggtacgtatgcgagaaaaatatagagaaagggaacaaacaactgtatggtacaaatccattggcaaaggct 8447076  T
Q  390 tcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttcaactctggtgtttcagcttgcatttgctcctcgaatgaagatcaaac 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447075 tcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttcaactctggtgtttcagcttgcatttgctcctcgaatgaagatcaaac 8446976  T
Q  490 aagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttggctggtgatga 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446975 aagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttggctggtgatga 8446876  T
Q  590 gttcacacttgccgacctttcacatcttcccaatattcactacttggtgg 639  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446875 attcacacttgccgacctttcacatcttcccaatattcactacttggtgg 8446826  T

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