View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_21 (Length: 288)
Name: NF18623_high_21
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_21 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 33952524 - 33952793
Alignment:
| Q |
4 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttattattatattttcttctaggctacttaag |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
33952524 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactatgactattattattatattttcttctaggctacttaaa |
33952623 |
T |
|
| Q |
104 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952624 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
33952723 |
T |
|
| Q |
204 |
atgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaact |
273 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33952724 |
atgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaact |
33952793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 33975124 - 33975399
Alignment:
| Q |
4 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttat------tattatattttcttctaggcta |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
33975124 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33975223 |
T |
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| Q |
98 |
cttaagttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
197 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33975224 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33975323 |
T |
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| Q |
198 |
ggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaact |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33975324 |
ggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaact |
33975399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 33959824 - 33960099
Alignment:
| Q |
4 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttat------tattatattttcttctaggcta |
97 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
33959824 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33959923 |
T |
|
| Q |
98 |
cttaagttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
197 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959924 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33960023 |
T |
|
| Q |
198 |
ggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaact |
273 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33960024 |
ggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaact |
33960099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 33992044 - 33992309
Alignment:
| Q |
4 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttattattatattttcttctaggctacttaag |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
33992044 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattatattttcttctaggctacttaaa |
33992143 |
T |
|
| Q |
104 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
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| T |
33992144 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatc-tttaagtaattaattaacctcttctcatttaccaggaaaa |
33992242 |
T |
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| Q |
204 |
atgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagaga |
270 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33992243 |
atgcaagtgacacagacaataacaactacaataatcacttcatcatccttcatgatattctaagaga |
33992309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 33942254 - 33942336
Alignment:
| Q |
176 |
attaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgat |
259 |
Q |
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|||||| |||| ||| || |||||||||||||||||||||| || ||| || ||||| ||||| |||||||| ||||||||||| |
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| T |
33942254 |
attaacttctgttcaattcccaggaaaaatgcaagtgacacagaaaattactactac-ataatcacttcatcgtccttcatgat |
33942336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 33913544 - 33913618
Alignment:
| Q |
196 |
caggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagaga |
270 |
Q |
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| T |
33913544 |
caggaaaaatgcaagtgacacagaaagttactactacaatagccacttcatattccttcatgatcttctaagaga |
33913618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 8278231 - 8277963
Alignment:
| Q |
4 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttattattatattttcttctaggctacttaag |
103 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||| | || |
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| T |
8278231 |
atggaaatcatcaataaattaggcctcatgaatttggctaatgtgataataccaaggtactaggactattattattatattttcttcttggctaataaaa |
8278132 |
T |
|
| Q |
104 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||| |
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| T |
8278131 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtgaaataatttcttatc-tttaagtaactaattaacctctgctcatttacctgaaaaa |
8278033 |
T |
|
| Q |
204 |
atgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagagaact |
273 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8278032 |
gtgaaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaact |
8277963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 2891615 - 2891524
Alignment:
| Q |
174 |
taattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattcta |
265 |
Q |
| |
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|||||| ||| |||||||||||||| ||||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||| || ||||| |
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| T |
2891615 |
taattaccctttgctcatttaccagaaaaaatgcaagtgacacatacaattacaactataatagccacttcatcatctttcataatcttcta |
2891524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 12246 - 12341
Alignment:
| Q |
175 |
aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttcatgatattctaagaga |
270 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
12246 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagaga |
12341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 12115 - 12174
Alignment:
| Q |
4 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtac |
63 |
Q |
| |
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||||| ||||| |||||||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
12115 |
atggaaatcataaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac |
12174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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