View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18623_high_24 (Length: 256)
Name: NF18623_high_24
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_24 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5613446 - 5613200
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5613446 |
cagggccttttccaacatctatcttccaactccgttcactttctatcctccatctttcctctaataggttgaatgggtcactacaactagatgagctttt |
5613347 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5613346 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
5613247 |
T |
|
| Q |
201 |
tatcttcatttggcatcctgcaacctgaaaacttttcctatattctt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5613246 |
tatcttcatttggcatcctgcaacctgaaaacttttcctatattctt |
5613200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5895410 - 5895656
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5895410 |
cagggccttttccaacatctatcttccagctccgttcactttctttcctctatctttcctctaataggttgaatgggtcactacaactagatgagctttt |
5895509 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5895510 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgaccagactgcctttcccaattttgaa |
5895609 |
T |
|
| Q |
201 |
tatcttcatttggcatcctgcaacctgaaaacttttcctatattctt |
247 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| |||| |||||| |
|
|
| T |
5895610 |
cttctttatttatcatcctgcaacttgaaaactttccctagattctt |
5895656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5886565 - 5886811
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| | ||||||||| | || || | | |||||||||| |
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|
| T |
5886565 |
cagggccttttccaacatctatcttccagctcaattcactttctgtcctcagtctttcctctaacaagttgaatggattgcttcagcaagatgagctttt |
5886664 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
200 |
Q |
| |
|
||||||||| |||||| | || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5886665 |
gaagcttagaaatttacatagtttacacctttcatacaacaacatatcaatcattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaa |
5886764 |
T |
|
| Q |
201 |
tatcttcatttggcatcctgcaacctgaaaacttttcctatattctt |
247 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
5886765 |
cgtctttttttggcatcctgcaacttgaaaactttccctagattctt |
5886811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 5848346 - 5848538
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||| ||||||||||||||||||||| | || ||| |||||||||| |
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|
| T |
5848346 |
cagggccttttccaacatctctcttccagttccgttcactttttttcctcgatctttcatctaataggttgaatgggtcaatgcagctagatgagctttt |
5848445 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaa |
193 |
Q |
| |
|
| ||||||| |||||| | ||| |||||||||||||||||||||||| | |||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
5848446 |
ggagcttagaaatttaactgacctaaccctttcatacaacaacatatcaatcattgagaatgatgcaagtgttgatcagacagcctttcccaa |
5848538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5539625 - 5539864
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||||||||| | || || || |||||||||| |
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|
| T |
5539625 |
cagggtcttttccaacatctatcttccagcttcgttcactttctgtcctcgatctttcctttaacaggttgaatggattgctgcagttagatgagctttt |
5539724 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
200 |
Q |
| |
|
|||||| || |||||| | |||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||| ||||| ||||| || | |
|
|
| T |
5539725 |
gaagctaagaaatttaactgcactagacctttcatacaacaacatatcaatcaatgtgaatgttgaaaatgctgatcatacttccttttccaatatt-ag |
5539823 |
T |
|
| Q |
201 |
ta-tcttcatttggcatcctgcaacctgaaaacttttccta |
240 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
5539824 |
tactctaatgttggcatcctgcaacctgaaaactttcccta |
5539864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5558851 - 5558612
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
||||| || |||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||| || ||| || | ||||| |
|
|
| T |
5558851 |
cagggtctgttccaacatctatcttcctgcttcgttcactttctgtcctcgatctttcctctaacaggttgaatgggtcactgcatctagataaactttt |
5558752 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
200 |
Q |
| |
|
| ||||||| |||||| | |||| |||||||||| |||||||||||||| |||| | ||||||||||| |||||| ||| ||||||||| ||| | |
|
|
| T |
5558751 |
ggagcttagaaatttaactgcactaaacctttcatataacaacatatcaatcaatgtaagtgatgcaaatgttgatcatactttctttcccaaatttaca |
5558652 |
T |
|
| Q |
201 |
tatcttcatttggcatcctgcaacctgaaaacttttccta |
240 |
Q |
| |
|
||| | |||||| |||||||| |||||||||| |||| |
|
|
| T |
5558651 |
cgtctagaattggcaacctgcaacttgaaaactttcccta |
5558612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5571488 - 5571727
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||| | ||||| |||||||| ||| ||||||||||| | | || ||| |||||||||| |
|
|
| T |
5571488 |
cagggccttttccaacatctatcttccagttcagatcactttatgtcctcgatctttccattaacaggttgaatggttgggtgcagctagatgagctttt |
5571587 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaa |
200 |
Q |
| |
|
| |||| |||| |||| | ||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||| | ||| ||||| || | |
|
|
| T |
5571588 |
ggagctaagtagtttaactgccctagacctttcatacaacaacatatcaatcaatgtgaatgttgaaaatgctgatcatacttcgttttccaatatt-ag |
5571686 |
T |
|
| Q |
201 |
ta-tcttcatttggcatcctgcaacctgaaaacttttccta |
240 |
Q |
| |
|
|| | | | |||||||||||||||||||||||||| |||| |
|
|
| T |
5571687 |
tactttaaagttggcatcctgcaacctgaaaactttcccta |
5571727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5583695 - 5583934
Alignment:
| Q |
1 |
cagggccttttccaacatctatcttccagctccgttcactttctatcctctatctttcctctaataggttgaatgggtcactacaactacatgagctttt |
100 |
Q |
| |
|
||||||| ||||||| |||||||| | |||| ||| |||||| ||||| ||||||||| ||| |||||||||||||| || || ||| |||||||| | |
|
|
| T |
5583695 |
cagggccatttccaatgtctatctttaaactccattcgctttctgtcctcgatctttcctttaacaggttgaatgggtcgctgcagctagatgagcttat |
5583794 |
T |
|
| Q |
101 |
gaagcttagtaatttattaggactagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaat-tttga |
199 |
Q |
| |
|
| ||||||| |||||| |||||||||||||||||||||||||||| |||||| |||| | ||||| || || | ||| ||||||||||| || | |
|
|
| T |
5583795 |
ggagcttagagatttatctacactagacctttcatacaacaacatatcagtaaatgtaaatgtttcaaatcctaattatacttcctttcccaatattagc |
5583894 |
T |
|
| Q |
200 |
atatcttcatttggcatcctgcaacctgaaaacttttccta |
240 |
Q |
| |
|
| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
5583895 |
aca-ctcattttggcatcctgcaacctgaaaactttcccta |
5583934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 5605206 - 5605135
Alignment:
| Q |
123 |
ctagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaat |
194 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
5605206 |
ctagacctttcatacaacaacatgtcaatcaatgggaatgatgcaaatgttgatcagatttcctttcccaat |
5605135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 5564521 - 5564465
Alignment:
| Q |
122 |
actagacctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatca |
178 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||| ||| |||| |||||| |
|
|
| T |
5564521 |
actaaacctttcatacaacaacatatcaattaatgggaatgttgctaatgttgatca |
5564465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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