View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18623_high_26 (Length: 248)
Name: NF18623_high_26
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 13179827 - 13179910
Alignment:
| Q |
158 |
gatatattgatgctatatggacaatttagacatcacaaacaattttattaagtccgagtctgttataatttgtgacctttgctact |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| |||| |
|
|
| T |
13179827 |
gatatattgatgctat--ggacaatttagacatcacaaacaattttattatgtccaagtctgttataatttgtgacttttgatact |
13179910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 49092366 - 49092241
Alignment:
| Q |
97 |
ctcacttattt-ttagttatttattttccaacaatcccaatcatgtttgattttcatttgatgatatattgatgctatatggacaatttagacatcacaa |
195 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| || |
|
|
| T |
49092366 |
ctcacttatttgttagttatttatttttcaa--atctcaatcatgtatgattttcatttgat---atgttgatgctat--ggacaatttagacatcagaa |
49092274 |
T |
|
| Q |
196 |
acaattttattaagtccgagtctgttataattt |
228 |
Q |
| |
|
||||||||||| || ||||| ||||||||| |
|
|
| T |
49092273 |
gcaattttattatgttggagtcaattataattt |
49092241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 44904497 - 44904405
Alignment:
| Q |
108 |
ttagttatttattttccaacaatcccaatcatgtttgattttcatttgatgatatattgatgctatatggacaatttagacatcacaaacaattttatta |
207 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
44904497 |
ttagttatttatttttcaa--atctcaatcatgtatgattttcatttgat---atgttgatgctat--ggacaatttagacatcagaaacaattttatta |
44904405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University