View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_31 (Length: 227)
Name: NF18623_high_31
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36027470 - 36027244
Alignment:
| Q |
1 |
caaaagcgaaaagataaaaaagactgttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatc |
100 |
Q |
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| T |
36027470 |
caaaagcgaaaagataaaaaagactgttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatc |
36027371 |
T |
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| Q |
101 |
atctgagtagggtaagattggacgcactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagca |
200 |
Q |
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| T |
36027370 |
atctgggtagggtaagattggacgcactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagca |
36027271 |
T |
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| Q |
201 |
atcattgtgaaaaatataacgtacaca |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36027270 |
atcattgtgaaaaatataacgtacaca |
36027244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 16931801 - 16931987
Alignment:
| Q |
26 |
gttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgagtaggg-taagattggacg |
124 |
Q |
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|||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||| || |||| |||||| | |||||| |||||||||||| |
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| T |
16931801 |
gttttcaaacaatattatatttatcaaactcatcgttgaa-ttagacagggatgatatgataattatgagaaatcatcggggtaggggtaagattggacg |
16931899 |
T |
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| Q |
125 |
cactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16931900 |
cactaatatcgctggtcatgagaggtgcagag--atatctttaaacaactaaaatcatcacaccacattaccagcaatcattgtgaaaaa |
16931987 |
T |
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