View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_4 (Length: 584)
Name: NF18623_high_4
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 305 - 566
Target Start/End: Complemental strand, 3657891 - 3657630
Alignment:
| Q |
305 |
gtatacaataggttatcaactactacnnnnnnntaggttatcaactaatccaagcactttataagtcgatgtgttttctacacttaaaagcaacaacata |
404 |
Q |
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| T |
3657891 |
gtatacaataggttatcaactactctaaaaaaataggttatcaactaatccaaacactttataagtcgatgtgttttctacacttaaaagcaacaacata |
3657792 |
T |
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| Q |
405 |
ctataccccaacatactatattgccatgttaatataatttttctaacgtgccttcccatatagtgaaagttatgacccttgtaatgtgtactagaaggtt |
504 |
Q |
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| T |
3657791 |
ctataccccaacatactatattgccatgttaatataatttttctaacgtgccttcccatatagtgaaagttatgacccttgtaatgtgtactagaaggtt |
3657692 |
T |
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| Q |
505 |
aagccagaattggggtttgcataagcacatgccccatgtgcctatatttaagaggacttggc |
566 |
Q |
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| T |
3657691 |
aagccagaattggggtttgcataagcacatgccccatgtgcctatatttaagaggacttggc |
3657630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 3658214 - 3657925
Alignment:
| Q |
12 |
aagtcgaaagaacatccaaaactaattgtgctagcgttacgcggcttgcaaacgacaaattcttttcttgattttccaacttcatttaagttattgtctt |
111 |
Q |
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| T |
3658214 |
aagtcgaaagaacatccaaaactgactgtactaacgttacacggcccgcaaacgataga-----ttcttgattttcgaatttcatttaagttattttctt |
3658120 |
T |
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| Q |
112 |
tagtttcctcacaatttcatacacgtcctcgtgttttctttgtccgtaaaaattcgtgaaaaatcctcttattatcgttgaatcaagaacattgtgaaaa |
211 |
Q |
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| T |
3658119 |
tagtttcctcacaatttcatacacgtcgtctttttttctttgtccttaaaagtttgtgaaaaatcctcttattatctttgaatcaagaacattgtgaaaa |
3658020 |
T |
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| Q |
212 |
tttggacgctcatataaggtcgtccgtgttatcagttaaattaactcgtcctagatcttgcgatcgcactaccgaaatattcacatgcgcttggt |
306 |
Q |
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| T |
3658019 |
tttacacgctcacataagatcgcccgtcttatcagttaaattaactcatcctagatcttgcgattgcactaccgaaataatcacaagcgcttggt |
3657925 |
T |
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