View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_6 (Length: 465)
Name: NF18623_high_6
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 43178956 - 43179401
Alignment:
| Q |
1 |
tattatttaatgggaccctattggagaaatatggtttaccaaacatttgtaaattgtagacactttgactaagtaagggaacatagtagttacacgcgta |
100 |
Q |
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| T |
43178956 |
tattatttaatgggaccctattggagaaatatggtttaccaaacatttgtaaattgtatacactttgacaaagtaagggaacatagtagttacacgcgta |
43179055 |
T |
|
| Q |
101 |
gaaaaatgactatgctttaacttgcactttgttatctttgaattgatcgaatcaaatcatgtacacacacctagaaaccccttttttcctatccatcata |
200 |
Q |
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| T |
43179056 |
gaaaaatgactatgctttaacttgcactttgttatctttgaattgatcgaatcaaatcatgtacacacacctagaaaccccttttttcctatccatcata |
43179155 |
T |
|
| Q |
201 |
atcataaattaataactattttgaagttttcctaacacnnnnnnngaaagataatatatggctttaattttcccatgcatagatatatgacttgtctata |
300 |
Q |
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| T |
43179156 |
atcataaattaatagctattttgaagttttcctaacactttttttgaaagataatatatggctttaattttcccatgcatagatatatgacttgtctata |
43179255 |
T |
|
| Q |
301 |
ttctacgtgttacacattaaacatagacaaccctttccaattccattgcaaaggatcattataaatacggaactagttctgtaaattgataaaccacacc |
400 |
Q |
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| T |
43179256 |
ttctacgtgttacacattagacatagacaacctt------ttctattgcaaaggatcattataaatacggaactagttctgtaaattgataaaccacacc |
43179349 |
T |
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| Q |
401 |
cctcttctcaataacaaagag-aaacactagagctagctaagtgaaactttt |
451 |
Q |
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| T |
43179350 |
cctcttctcaataacaaagagaaaacactagagctagctaagtgaaactttt |
43179401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 357 - 449
Target Start/End: Original strand, 43193754 - 43193847
Alignment:
| Q |
357 |
cattataaatacggaactagttctgtaaattgataaaccacacccctcttctcaataacaaagag-aaacactagagctagctaagtgaaactt |
449 |
Q |
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| T |
43193754 |
cattataaatatggaactagttctataaattgataaaccacaccactcttctcaataacaaagagaaaacactagagctagcttagtgaaactt |
43193847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 449
Target Start/End: Original strand, 43186471 - 43186563
Alignment:
| Q |
358 |
attataaatacggaactagttctgtaaattgataaaccacacccctcttctcaataacaaagagaaa-cactagagctagctaagtgaaactt |
449 |
Q |
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| T |
43186471 |
attataaatatggaactagtttgataaattgataaaccacacctctcttctcaagaacaaagaaaaatcacaagagttagcttagtgaaactt |
43186563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 43186060 - 43186175
Alignment:
| Q |
102 |
aaaaatgactatgctttaacttgca-ctttgttatctttgaattgatcgaatcaaatcatgtaca--cacacctaga-aaccccttttttcctatccatc |
197 |
Q |
| |
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||||||||| |||||||| ||||| ||||||||||||| || |||||||||||| |||| ||| |||||||| | |||||| |||||| |||| || |
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| T |
43186060 |
aaaaatgacgctgctttaatttgcatctttgttatctttaaaatgatcgaatcaattcataaacactcacacctaaacaaccccatttttctaatccgtc |
43186159 |
T |
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| Q |
198 |
ataatcataaattaat |
213 |
Q |
| |
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|||||||||||||||| |
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| T |
43186160 |
ataatcataaattaat |
43186175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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