View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_high_8 (Length: 433)
Name: NF18623_high_8
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_high_8 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 415
Target Start/End: Original strand, 11181 - 11584
Alignment:
| Q |
12 |
aagaatatgattggtacagctgagagacatggagatttgtatgttatacaagcccatgcctcagttcctttactttctcccatgctttcttgtaattctg |
111 |
Q |
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| T |
11181 |
aagaaaatgattggtacagctgagagacatggagatttgtatgctatacaagcccatgcctcagtttctttactttctcccatgctttcttgtaattctg |
11280 |
T |
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| Q |
112 |
tttctaataacatggattctgcctctttatggcattgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatgtc |
211 |
Q |
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| T |
11281 |
tttctaataacatggattctgcctctttatggcattgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatccttttatttc |
11380 |
T |
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| Q |
212 |
ttacaagaatggtaataaaaatactccttgtgatgtttgtcatttttccaaacaaagagttcttcgttatcctaatagtgttactcattctaatagcatt |
311 |
Q |
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| T |
11381 |
ttacaagaatcataataaaaatactccttgtgatgtttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataacatt |
11480 |
T |
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| Q |
312 |
tttgatttgttacatgctgagatatcgggcccttatgctactccttctgtttctggacatagatattttctcactcttgttgatgattatagtagattta |
411 |
Q |
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| T |
11481 |
tttgatttgttacatgctgatatatggggcccttatgctactccttttgtttctggacatagatattttctcactcttgttgatgattatagtagattta |
11580 |
T |
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| Q |
412 |
cttg |
415 |
Q |
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| T |
11581 |
cttg |
11584 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 22454768 - 22454726
Alignment:
| Q |
150 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
192 |
Q |
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| T |
22454768 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
22454726 |
T |
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