View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18623_low_1 (Length: 869)

Name: NF18623_low_1
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18623_low_1
NF18623_low_1
[»] chr3 (7 HSPs)
chr3 (23-261)||(1653369-1653606)
chr3 (666-869)||(1653990-1654193)
chr3 (480-604)||(1653802-1653926)
chr3 (371-419)||(1653693-1653741)
chr3 (83-186)||(20611251-20611354)
chr3 (107-226)||(17501769-17501888)
chr3 (107-253)||(19175882-19176028)
[»] chr7 (3 HSPs)
chr7 (54-218)||(38305674-38305839)
chr7 (54-231)||(3420141-3420319)
chr7 (83-182)||(47326382-47326481)
[»] chr1 (6 HSPs)
chr1 (670-808)||(26841590-26841725)
chr1 (512-602)||(26841797-26841887)
chr1 (54-222)||(41919892-41920062)
chr1 (88-253)||(24685026-24685191)
chr1 (374-419)||(13986965-13987010)
chr1 (114-209)||(4651227-4651322)
[»] chr8 (7 HSPs)
chr8 (670-808)||(15049643-15049780)
chr8 (113-253)||(34866599-34866739)
chr8 (512-602)||(15049862-15049952)
chr8 (157-253)||(9519020-9519116)
chr8 (108-222)||(34389550-34389664)
chr8 (54-142)||(31210563-31210658)
chr8 (63-254)||(10551706-10551891)
[»] chr4 (1 HSPs)
chr4 (108-253)||(30963842-30963987)
[»] chr2 (5 HSPs)
chr2 (91-186)||(39339351-39339446)
chr2 (114-232)||(31902927-31903045)
chr2 (107-257)||(2062217-2062367)
chr2 (380-419)||(9561543-9561582)
chr2 (199-257)||(27739124-27739182)
[»] chr6 (2 HSPs)
chr6 (114-231)||(12793538-12793655)
chr6 (72-231)||(16510789-16510948)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 3e-84; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 1653369 - 1653606
Alignment:
Q  23 caacaccactcaacaccatcaccaaaactagataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaa 122  Q
    |||||||| ||| ||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  1653369 caacacca-tcaccaccaccaccaaaactgaataacctccaccaccactgcatcaccactaccaacactgcattacaacgttgacaaacctcctcacgaa 1653467  T
Q  123 gaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatc 222  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||| ||||| ||||  |||||||||| ||||||||||||||||    
T  1653468 gaaacaggcagcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatc 1653567  T
Q  223 gtaacaaggttgccaccagtgacaaggagaaggcgcaac 261  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1653568 gtaacaaggttgccgccagtgacaaggagaaggcgcaac 1653606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 666 - 869
Target Start/End: Original strand, 1653990 - 1654193
Alignment:
Q  666 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttga 765  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||||||||| ||||| |||    
T  1653990 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctgaacaccactcaaacacaccatggaaaccatacagaggagatga 1654089  T
Q  766 agaaaccaccacaaatcaccttaaaaaccaccaccaccgcaagttacaatctgaggaaacccagccgtcgacgcacccaccagagaccagtggtgatgcg 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  | ||||||||||||||||||| |||||||||    
T  1654090 agaaaccaccacaaatcaccttaaaaaccaccaccaccgcaagttatgatctgaggaaacccagccgctggcgcacccaccagagaccagaggtgatgcg 1654189  T
Q  866 gatg 869  Q
    ||||    
T  1654190 gatg 1654193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 480 - 604
Target Start/End: Original strand, 1653802 - 1653926
Alignment:
Q  480 gtccccctggagaagtcggaacagctaacagaaacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccat 579  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1653802 gtccccccggagaagtcggaacagctgacagaaacacacactacacaaccacaaccacccacctcttacccgctagtgaaccattaacgaccacccccat 1653901  T
Q  580 aacgacctttcactggcgcaacaga 604  Q
    |||||||| ||||||||||||||||    
T  1653902 aacgacctctcactggcgcaacaga 1653926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 1653693 - 1653741
Alignment:
Q  371 gcaacacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653693 gcaacacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 1653741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 20611354 - 20611251
Alignment:
Q  83 accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacg 182  Q
    |||| ||||||||||| | | || ||||| |||||||||||||||||||| ||||||||| |||||| | |  |||||  ||||||||||| ||||||||    
T  20611354 accaccactgcatcactatgccgccaaacatcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaacacg 20611255  T
Q  183 agca 186  Q
    ||||    
T  20611254 agca 20611251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 17501769 - 17501888
Alignment:
Q  107 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 206  Q
    ||||| |||||||||| ||| ||| ||||||||||| |||||| | | ||||||| ||||| ||||| ||||||||  ||   |||  ||||||||||||    
T  17501769 caaacatcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcgg 17501868  T
Q  207 aaagacaacccagatcgtaa 226  Q
    ||| |||||| |||||||||    
T  17501869 aaacacaacctagatcgtaa 17501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 19176028 - 19175882
Alignment:
Q  107 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 206  Q
    ||||| |||||||||||||||| ||| || |||||||||| || |   || |||||||||||||||| |||||||| ||| | | ||  |||||||| ||    
T  19176028 caaacatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagagg 19175929  T
Q  207 aaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 253  Q
    ||  |||||||| ||| ||| ||||  ||| || |||||||||||||    
T  19175928 aaccacaacccatatcataaaaaggcagccgcctgtgacaaggagaa 19175882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 38305839 - 38305674
Alignment:
Q  54 ataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatatg 152  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| ||| |  |||| | |||||||||||||||| ||| ||||||||||||  || |     
T  38305839 ataacctccaccaccactgcatcaccaccaccgtcactgcatcactacgccaccaaaacatcctcaccaagaaacaagcaacaacacaaacatcaatcta 38305740  T
Q  153 ggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaaccca 218  Q
    | ||||||| ||||||||||| |||||||  ||| ||||||  |||||||||||||  ||||||||    
T  38305739 gaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaaccca 38305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 54 - 231
Target Start/End: Original strand, 3420141 - 3420319
Alignment:
Q  54 ataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatatg 152  Q
    |||||||| ||||||||||||||||||| ||   ||||||||||| |||||| |||| | |||||||||||||||| ||| |||||||  |||| || |     
T  3420141 ataacctccaccaccactgcatcaccaccactgtcactgcatcactacgtcgccaaaacatcctcaccaagaaacaagcaacaacacatgcataaattta 3420240  T
Q  153 ggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaagg 231  Q
    | ||||||| ||| | ||||| |||||||||||| | ||||  ||| |||||||||  |||||| ||||| ||| ||||    
T  3420241 gaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaagg 3420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 47326382 - 47326481
Alignment:
Q  83 accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacg 182  Q
    |||| ||||||||||| ||| || ||||| |||||||||||||||| ||||||||||||| || ||| | | ||||||  ||||||||||| ||||||||    
T  47326382 accaccactgcatcactacgccgccaaacatcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacg 47326481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 670 - 808
Target Start/End: Complemental strand, 26841725 - 26841590
Alignment:
Q  670 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttgaagaa 769  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||   || ||||  |||||| |||||| ||||| |||| ||||| ||||||     
T  26841725 aacttaacccaccaaaaactatctcgaaaacagccataaaaggaacatat---aacaccactgaaacaaaccatgaaaaccgtacagaggagatgaagag 26841629  T
Q  770 accaccacaaatcaccttaaaaaccaccaccaccgcaag 808  Q
    ||||||| ||| | |||| ||||| ||||| ||||||||    
T  26841628 accaccagaaaccgccttgaaaacaaccacaaccgcaag 26841590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 512 - 602
Target Start/End: Complemental strand, 26841887 - 26841797
Alignment:
Q  512 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 602  Q
    ||||||||| ||||||| |||||||||||||| |  || ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  26841887 aacacacaccacacaactgcaaccacccacctttggccggctagtgaaccattaaccaccaccctcataacgacctctcactggtgcaaca 26841797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 41920062 - 41919892
Alignment:
Q  54 ataacctctaccaccactgcatcaccactac-caacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatat 151  Q
    |||||||| |||||| ||| ||||||||  | || ||||||||||| ||| || |||| | |||||||||||||||| ||| ||||||||||||| || |    
T  41920062 ataacctccaccacctctgaatcaccaccgcgcatcactgcatcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatct 41919963  T
Q  152 gggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatc 222  Q
     | ||||||  |||||| |||| |||||||| ||| | ||||| |||||||||||||  ||||||||||||    
T  41919962 agaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatc 41919892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 24685026 - 24685191
Alignment:
Q  88 cactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcat 187  Q
    ||||||||||| ||| || ||||| |||||||||||||||| ||| ||||||||||||| || |   |  ||||||||| |||||| |||||||| |||     
T  24685026 cactgcatcactacgccgccaaacatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcag 24685125  T
Q  188 caacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 253  Q
    | ||||  ||||||||| |||  |||||||| ||| ||| ||| | ||| || |||||||||||||    
T  24685126 cgacgccggtttgaagcagaaccacaacccatatcataaaaagctggccgcctgtgacaaggagaa 24685191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 13987010 - 13986965
Alignment:
Q  374 acacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 419  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||    
T  13987010 acacccaaagaggacggcgacgcaaaaccaccacccactccttcgg 13986965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 4651322 - 4651227
Alignment:
Q  114 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaa 209  Q
    |||||||||||||||| |||||||||||||||||||   | ||||||| ||| | ||||| ||||||| |||| | || |  ||||||||||||||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaaa 4651227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 670 - 808
Target Start/End: Complemental strand, 15049780 - 15049643
Alignment:
Q  670 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttgaagaa 769  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || ||||   ||||| |||||||||| | || | ||||| |||||||    
T  15049780 aacttaacccaccaaaaactagctcgaaaatagccataaatggaacatatctgaaaaccactaaaacaaaccatggaaa-cgtatagaggagatgaagaa 15049682  T
Q  770 accaccacaaatcaccttaaaaaccaccaccaccgcaag 808  Q
    |||| || ||| |||||| ||||||||||| ||| ||||    
T  15049681 accatcaaaaaccaccttgaaaaccaccacaaccacaag 15049643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 34866599 - 34866739
Alignment:
Q  113 tcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagac 212  Q
    |||||||||||||||| ||| ||||||||||||| || | | ||||||| ||||||||||| |||||||| ||| | ||||  |||||||||||||  ||    
T  34866599 tcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccac 34866698  T
Q  213 aacccagatcgtaacaaggttgccaccagtgacaaggagaa 253  Q
    ||||||| || ||| ||||  | | || |||||||||||||    
T  34866699 aacccaggtcataaaaaggcggtcgcctgtgacaaggagaa 34866739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 512 - 602
Target Start/End: Complemental strand, 15049952 - 15049862
Alignment:
Q  512 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 602  Q
    ||||||||| ||| |||||||||||| ||||| |  ||  |||||||||||||||| ||||||||||||||||||| |||| | |||||||    
T  15049952 aacacacaccacataaccgcaaccacacacctatggccgactagtgaaccattaaccaccacccccataacgacctctcaccgacgcaaca 15049862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 9519116 - 9519020
Alignment:
Q  157 aagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 253  Q
    ||||| ||| ||||||| |||||||| ||| | ||||| ||||||||||| || |||||||| || ||||||| |||||||||  ||||||||||||    
T  9519116 aagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaatgttgccacctttgacaaggagaa 9519020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 34389550 - 34389664
Alignment:
Q  108 aaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgga 207  Q
    |||| |||||||||||||||| ||| ||||||||||||| || | | ||| ||| |||| | |||| |||||||| ||| | ||||  ||||||||||||    
T  34389550 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcgga 34389649  T
Q  208 aagacaacccagatc 222  Q
    |  ||||||||||||    
T  34389650 agcacaacccagatc 34389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 31210563 - 31210658
Alignment:
Q  54 ataacctctaccaccactgcatcaccact-------accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaa 142  Q
    |||||||| ||||||||| ||||||||||       |||| ||||||||||| ||| || ||||| || |||||||||||||||||||||||||||    
T  31210563 ataacctccaccaccactacatcaccactgcgcatcaccaccactgcatcactacgccgccaaacatcgtcaccaagaaacaggcagcaacacaaa 31210658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 254
Target Start/End: Complemental strand, 10551891 - 10551706
Alignment:
Q  63 accaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagaca 162  Q
    ||||||||||||||||||| ||||      | ||| |||| ||||||||   ||| |||||||| || ||||||||||||||||||| | | |||||||     
T  10551891 accaccactgcatcaccaccacca------cttcataacgccgacaaacagtctctccaagaaatagacagcaacacaaacatagatctagaggaagacg 10551798  T
Q  163 aaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaag 254  Q
    ||| ||||||| ||| |||| ||| | ||||   ||||||||||||| || |||| |||| ||| |||| || |  | ||||||||||||||    
T  10551797 aaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaaggctgtcgtcggtgacaaggagaag 10551706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 30963987 - 30963842
Alignment:
Q  108 aaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgga 207  Q
    |||| |||||||||||||||| ||| ||||||||||||| || | | ||||||| ||||||||| | |||||||| ||||| ||||  |||||||| |||    
T  30963987 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtgga 30963888  T
Q  208 aagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 253  Q
    |  |||||||||||| ||| ||| | | | || |||||||||||||    
T  30963887 accacaacccagatcataaaaagatggtcgcctgtgacaaggagaa 30963842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 39339351 - 39339446
Alignment:
Q  91 tgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagca 186  Q
    |||||||| ||| || ||||| ||||||||||||||||| |||||||||||| |||||| | | ||||||  ||||||||||| ||||||||||||    
T  39339351 tgcatcactacgccgccaaacatcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagca 39339446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 31902927 - 31903045
Alignment:
Q  114 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagaca 213  Q
    ||||| |||||||||  ||||||||| ||||||||| | | ||||||| ||| ||||||| |||||||| ||| | ||||  |||||||||||||| |||    
T  31902927 cctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacaca 31903026  T
Q  214 acccagatcgtaacaaggt 232  Q
    ||| ||||| ||| |||||    
T  31903027 acctagatcataaaaaggt 31903045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 2062367 - 2062217
Alignment:
Q  107 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 206  Q
    |||||| |||||||||||||| || ||| ||||||||| ||||   | | ||||   || ||||||| |||||||| ||| | ||||  || ||||||||    
T  2062367 caaaccacctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcgg 2062268  T
Q  207 aaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaaggcg 257  Q
    ||| ||||||||||||||||  ||||  ||||| | |||||||||||||||    
T  2062267 aaacacaacccagatcgtaaacaggtatccaccggagacaaggagaaggcg 2062217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 9561543 - 9561582
Alignment:
Q  380 aaagaggacggtggcgcaaaaccaccacccactccttcgg 419  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  9561543 aaagaggacgatgacgcaaaaccaccacccactccttcgg 9561582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 27739182 - 27739124
Alignment:
Q  199 tgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaaggcg 257  Q
    ||||||||||| ||||| ||||||| || ||||| ||||| ||||||||| ||||||||    
T  27739182 tgaagcggaaacacaacgcagatcgaaaaaaggtggccactagtgacaagaagaaggcg 27739124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 12793655 - 12793538
Alignment:
Q  114 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagaca 213  Q
    |||||||||||||||| ||||||||||||  |||||   | ||||||| ||||||| ||  |||||||| ||| | |||| ||||||||||| ||| |||    
T  12793655 cctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacaca 12793556  T
Q  214 acccagatcgtaacaagg 231  Q
    ||||| ||||||| ||||    
T  12793555 acccatatcgtaaaaagg 12793538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 231
Target Start/End: Original strand, 16510789 - 16510948
Alignment:
Q  72 gcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaac 171  Q
    |||| ||||| |||| |||| |||||| ||| || ||| | |||||||||||||||| ||| ||||||||||||| || | | ||||||| | |||||||    
T  16510789 gcataaccaccaccatcactacatcactacgccgccaaccatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaac 16510888  T
Q  172 aataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaagg 231  Q
    || |||||||| ||| | | ||  ||||||||| |||  |||||||| ||| ||| ||||    
T  16510889 aacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaagg 16510948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University