View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_11 (Length: 422)
Name: NF18623_low_11
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 36027247 - 36026843
Alignment:
| Q |
1 |
cacaatcacttaaatatcaactaatattaaagatgtatgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027247 |
cacaatcacttaaatatcaactaatattaaagatgtatgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatatgg |
36027148 |
T |
|
| Q |
101 |
cttgatatagctggctacataaaccagcatcaaatcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaaag |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027147 |
cttgatatagctggctacataaaccagtatcaaatcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaaag |
36027048 |
T |
|
| Q |
201 |
agaaccagtattcaaaccacaccaatttccttgcatgcattagataatgaaaatattaaccaaaaagggggtgaaatcaacaagattttgaaatgttaag |
300 |
Q |
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| T |
36027047 |
agaaccagtattcaaaccacaccaatttccttgcatgcattagataattaaaatattaaccaaaaagggggtgaaatcaacaagattttgaaatgttaag |
36026948 |
T |
|
| Q |
301 |
agatcaactttgtaaagaaattcataccacacccacttcattgcatgcgtttttacaaagcctggataattttgaattgtggatatcagataccatagta |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36026947 |
agatcaactttgtaaagaaattcataccacacccaattcattgcatgcgtttttacaaagcctggataattttgaattgtggatatcagataccatagta |
36026848 |
T |
|
| Q |
401 |
aaaca |
405 |
Q |
| |
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||||| |
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| T |
36026847 |
aaaca |
36026843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 134 - 405
Target Start/End: Original strand, 16932767 - 16933040
Alignment:
| Q |
134 |
atcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaaagagaaccagtattcaaaccacaccaatttccttg |
233 |
Q |
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||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
16932767 |
atcatgacacactgctaaaccagcaaagtatgaatcttctgaatgcaacttgattcaggaagaaaagagaaccagtactcaaaccaccccaacttccttg |
16932866 |
T |
|
| Q |
234 |
catgcattagataatgaaaatattaaccaaaaagggggtgaaatcaacaagattttgaaatgttaagagatcaactttgtaaagaaattcataccacacc |
333 |
Q |
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| T |
16932867 |
catgcattagataatgaaaatattaaccaaaaagggggtgaaatcaataagatcttcaaatgttaagagatcaactttgtaaagaaattcataccacgcc |
16932966 |
T |
|
| Q |
334 |
cacttcattgcatgcgtttttacaaagcctggataattttgaat--tgtggatatcagataccatagtaaaaca |
405 |
Q |
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| T |
16932967 |
cacttcattgcatgcatttttacaaagcctagacaattttgaattgtgtggatatcagataccataggaaaaca |
16933040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 16932599 - 16932726
Alignment:
| Q |
9 |
cttaaatatcaactaatattaaagatgta-tgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatatggcttgata |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
16932599 |
cttaaatatcaactaatattaaaaatgtaatgtatgaaattgcgaaaagaaagattccacaagagatccaactcgatatatttgataatattgcttgata |
16932698 |
T |
|
| Q |
108 |
tagctggctacataaaccagcatcaaat |
135 |
Q |
| |
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|||||||| ||||||||||| ||||||| |
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|
| T |
16932699 |
tagctggccacataaaccagtatcaaat |
16932726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 16936466 - 16936521
Alignment:
| Q |
214 |
aaaccacaccaatttccttgcatgcattagataatgaaaatattaaccaaaaagggg |
270 |
Q |
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|||||||||||| ||| || |||||||||||| |||||||||||| || |||||||| |
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| T |
16936466 |
aaaccacaccaacttcatt-catgcattagattatgaaaatattagcccaaaagggg |
16936521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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