View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_13 (Length: 394)
Name: NF18623_low_13
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 37 - 388
Target Start/End: Original strand, 44346821 - 44347172
Alignment:
| Q |
37 |
actaagaacaaagcttttataagtaactgcttcatccaaagatctctaatattaaaaattcttgcactacgttcttttcaaataaccaagatacaggaca |
136 |
Q |
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| T |
44346821 |
actaagaacaaagcttttataagtaactgcttcatccaaagatctctaatattaaaaattcttgcactacgttcttttcaaataaccaagatacaggaca |
44346920 |
T |
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| Q |
137 |
tctagattactcgaagacaagagctgatttccttcccgaacaaaagcgcgccatcaacgctaccaaagaagtcacaaccaacaaatagatgattaattgt |
236 |
Q |
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| T |
44346921 |
tctagattactcgaagacaagagctgatttccttcccgaacaaaagcgcaccatcaacactaccaaagaagtcacaaccaacaaatagatgattaattgt |
44347020 |
T |
|
| Q |
237 |
ttcctcctccttaccatgtcctcccgaacaatgtaacgaatcagaagccccacaccacgacgacttagattatcctttgttgggatccttttattaaata |
336 |
Q |
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| T |
44347021 |
ttcctcctccttaccatgtcctcccgaacaatgtaacgaatcagaagccccacaccacgacgacttagattatcctttgttgggatccttttattaaata |
44347120 |
T |
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| Q |
337 |
gtttcgaaacaaataaccttttattacatgataattatacacatattcttcg |
388 |
Q |
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| T |
44347121 |
gtttcaaaacaaataaccttttattacatgataattatacacatatttttcg |
44347172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 36281683 - 36281727
Alignment:
| Q |
197 |
taccaaagaagtcacaaccaacaaatagatgattaattgtttcct |
241 |
Q |
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|||||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
36281683 |
taccaaagaagtcatatccaagaaatagatgattaattgtttcct |
36281727 |
T |
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