View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_15 (Length: 363)
Name: NF18623_low_15
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 84 - 346
Target Start/End: Complemental strand, 12929841 - 12929579
Alignment:
| Q |
84 |
ttttgtcgttgtgttcaacattttccataaaacaataagagtgaaatatgcaagaggtggttatatttaaggacaaaaagttgttatatttaaggacaaa |
183 |
Q |
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| T |
12929841 |
ttttatcgttgtgttcaacattttccataaaacaataagagtgaaatatgcaagaggtggttatatttaaggataaaaagtgattatatttaaggacaaa |
12929742 |
T |
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| Q |
184 |
aagagtttcaaagagt-acactaaatttaattgaattatgtatactgcccttcattgagactttacaagtacagtctgattgcccttagccccatgttta |
282 |
Q |
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| T |
12929741 |
aagagtatcaaagagttacactaa-tttaattgaattatgtatactgcccttcattgagactttacaagcacaatctgagtacacttagccccatgttca |
12929643 |
T |
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| Q |
283 |
agtaacctacgctgcaccaaacttacattaataatccaaactaagagaaatacaaagatattaa |
346 |
Q |
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| T |
12929642 |
agtaacctacgctgcaccaaacttacattaataatccaaactaagagaaatacaaagatattaa |
12929579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 13408145 - 13408239
Alignment:
| Q |
15 |
ggaggtggtgggatatagttgaggttggactgtagcactagatttcctttgttatcttctcacgagctcttttgtcgttgtgttcaacattttcc |
109 |
Q |
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| T |
13408145 |
ggaggtggtggggtatagttgaggctggaatgtagcactgaatttcctttgtggttttctcttgagctcttttgtcgttgtgttcaacattttcc |
13408239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 43021360 - 43021454
Alignment:
| Q |
15 |
ggaggtggtgggatatagttgaggttggactgtagcactagatttcctttgttatcttctcacgagctcttttgtcgttgtgttcaacattttcc |
109 |
Q |
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| T |
43021360 |
ggaggtggtggggcatagttgagaccggactgtagcactaaatttcctttgtggtttactcgcgagctcttttgtcgcagtgttcaacattttcc |
43021454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 13377577 - 13377671
Alignment:
| Q |
15 |
ggaggtggtgggatatagttgaggttggactgtagcactagatttcctttgttatcttctcacgagctcttttgtcgttgtgttcaacattttccat |
111 |
Q |
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| T |
13377577 |
ggaggtggtggggtatagtggac--tgtactgtagcactaaattttcttcgtagttttctcgcgagctcttttgtcgctgtgttcaacattttccat |
13377671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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