View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_18 (Length: 344)
Name: NF18623_low_18
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 54180623 - 54180372
Alignment:
| Q |
1 |
aatggttagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatga |
100 |
Q |
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| T |
54180623 |
aatggttagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatga |
54180524 |
T |
|
| Q |
101 |
aaatgaagattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgtggttatgataatgaattttcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54180523 |
aaatgaagattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgtggttatgataatgaattttcaatt |
54180424 |
T |
|
| Q |
201 |
ccatatccaacttattttcatcctaataatgatgctcaaatttttgggtggc |
252 |
Q |
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| T |
54180423 |
ccatatccaacttattttcatcctactaatgatgctcaaatttttgggtggc |
54180372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 54180342 - 54180298
Alignment:
| Q |
282 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatct |
326 |
Q |
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| T |
54180342 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatct |
54180298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 22794523 - 22794699
Alignment:
| Q |
1 |
aatggttagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatga |
100 |
Q |
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||||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||| | | ||||||||||| ||| |||| ||| | |
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| T |
22794523 |
aatggttagcacaacaatctcaatggaaacgaatgtatggtaaggatcatttcatggttggtggaagagttggatatgattttaggagaggaagcgataa |
22794622 |
T |
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| Q |
101 |
aaatgaagattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgtg |
177 |
Q |
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| T |
22794623 |
agatgaagattggggaacaaagctaatgtttctgccggaagctagtaacattacgattttactaatagaatcgtgtg |
22794699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41948020 - 41948270
Alignment:
| Q |
1 |
aatggttagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatga |
100 |
Q |
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||||||||| ||||||| |||| ||||||||| | ||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| | ||||| |
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| T |
41948020 |
aatggttaggacaacaatctcagtggaaaagattgcatggtaaagatcatttcatggttggtggaagaattggttgtgattttaggagagaaggtgattc |
41948119 |
T |
|
| Q |
101 |
aaatgaagattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgt---ggt---tatgataatgaattt |
194 |
Q |
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| || | |||||||||||||| | ||||| || || |||| |||||||||||| | || | ||||||||||||| ||| ||||| ||||||||| |
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| T |
41948120 |
agatcataattggggaacaaagctaatgttcttgccagaagtaagtaacatgtcatttttgttaatagaatcatgtaaaggtttatatgacaatgaattt |
41948219 |
T |
|
| Q |
195 |
tcaattccatatccaacttattttcatcctaataatgatgctcaaattttt |
245 |
Q |
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|||||||||||||||||||||||||||||| ||||||| | |||||||| |
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| T |
41948220 |
ccaattccatatccaacttattttcatcctacaaatgatgatgaaattttt |
41948270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41942506 - 41942734
Alignment:
| Q |
1 |
aatggttagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatga |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | ||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| | | ||| |
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| T |
41942506 |
aatggttagcacaacaatctcagtggaaaagattgcatggtaaagatcatttcatggttggtggaagaattggttgtgattttaggagagaaggagattt |
41942605 |
T |
|
| Q |
101 |
aaatgaagattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgt---ggtt---atgataatgaattt |
194 |
Q |
| |
|
|||| |||| ||||||||| | |||| || || ||| ||||||| |||| | || | ||||||||| ||| |||| |||| ||||||||| |
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| T |
41942606 |
ggatgatgattttggaacaaagctaatgtccttgccagaattaagtaacgtgtcatttttgttaatagaatcgtgtaaaggtttatatgacaatgaattt |
41942705 |
T |
|
| Q |
195 |
tcaattccatatccaacttattttcatcc |
223 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
41942706 |
ccaattccatatccaacttattttcatcc |
41942734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 22794720 - 22794764
Alignment:
| Q |
180 |
tatgataatgaattttcaattccatatccaacttattttcatcct |
224 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
22794720 |
tatgagaatgaatttgcaattccatatccaacttattttcatcct |
22794764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 22794822 - 22794866
Alignment:
| Q |
282 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatct |
326 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| |||||||| |
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| T |
22794822 |
tatttgttttcatttgtcggtgctccaaggccaaatttaacatct |
22794866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 41942793 - 41942837
Alignment:
| Q |
282 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatct |
326 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||||||| |
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| T |
41942793 |
tatttgttttcatttgtcggtgctccaagacctaattcaacatct |
41942837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1210773 - 1211023
Alignment:
| Q |
1 |
aatggttagcacaacaacctcaatggaaaagagtatatggtaaggatcatttcatggttggtggaagaataagttatgattttagaagaagaagtgatga |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | ||||||| |||||||||||||||||||||||||| ||| ||||||| | ||| | ||||| |
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|
| T |
1210773 |
aatggttagcacaacaatctcagtggaaaagattgcatggtaaagatcatttcatggttggtggaagaattggttgtgatttttggagagaaggtgattt |
1210872 |
T |
|
| Q |
101 |
aaatgaagattggggaacaaagttgatgtttttaccggaagcaagtaacatgtcgatgttatcaatagaatcatgt---ggt---tatgataatgaattt |
194 |
Q |
| |
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| || | |||||||||||||| | ||||| || || |||| |||||||||||| | || | ||||||||||||| || ||||| ||||||||| |
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|
| T |
1210873 |
agatcataattggggaacaaagctaatgttcttgccagaagtaagtaacatgtcatttttgttaatagaatcatgtaaatgtttatatgacaatgaattt |
1210972 |
T |
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| Q |
195 |
tcaattccatatccaacttattttcatcctaataatgatgctcaaattttt |
245 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||| | |||||||| |
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|
| T |
1210973 |
ccaattccatatccaacttattttcatgctacaaatgatgatgaaattttt |
1211023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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