View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18623_low_2 (Length: 776)
Name: NF18623_low_2
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 105 - 767
Target Start/End: Complemental strand, 1309233 - 1308571
Alignment:
| Q |
105 |
tctgatcatgaccttgatcaannnnnnnnggaacattatcagaattgttaaaggctagtgactcggttagaatttgagtcttcgagtgtagatcattttt |
204 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1309233 |
tctgatcattaccttgatcaattttttttggaacattatcaaatttgttacaggctagtgactcggttagaatttgaggctttgagtgtagatcattttt |
1309134 |
T |
|
| Q |
205 |
ctgtccatccttcaacatgcaagaagatttcaaaagctgctttggatttgaagagggctgagctattttatttgtagaccgggtcaccatttttctcact |
304 |
Q |
| |
|
|||||| ||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1309133 |
ctgtccccccttcaatatgcgagaaggtttcagaagctgctttggatttgaagaggactgagctattttatttgtagaccgggtcaccatttttctcact |
1309034 |
T |
|
| Q |
305 |
gtcttgtttgtatccaaatctaatacatgcatgccctttttcaattccaaaacttttgttggctcttctccacatactacaggattgaccctctgagcaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1309033 |
gtcttgtttgtatccaaatctaatacatgcatgccctttttcaattccaaaacttttgttggctcttctccacatactacaggattgaccctctgagcaa |
1308934 |
T |
|
| Q |
405 |
catcttccatctctttatttttgtcatagttaatcattccttccttcaaacctctttcctctttatatttttcaatagattctcttattatacccttttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1308933 |
catcttccatctctttatttttgtcatagttaatcattccttccttcaaacctctttcctctttatatttttcaatagattctcttattatacccttttc |
1308834 |
T |
|
| Q |
505 |
caattccaaaactttttccggatcttctccgcatgctacaggatcgaccctttgagcaacatcttccatctctctatcattctgataattaaccaatcct |
604 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1308833 |
caattccaaaacttcttccggatcttctccgcatgctacaggatcgaccctttgagcaacatcttccatctctctatcattctgataattaaccaatcct |
1308734 |
T |
|
| Q |
605 |
tcctttggacctctttcctcttctttatttatttcattagattctagtagtgaatctctgcaagtattatttcgacaaacattttcaccatccacaatag |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1308733 |
tcctttggacctctttcctcttctttatttatttcattagattctagtagtgaatctctacaagtattatttcgacaaacattttcaccatccacaatag |
1308634 |
T |
|
| Q |
705 |
tggttatgttttgttcaggatattcattcccaaatgagtcaaagcaatccattttgttctctg |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1308633 |
tggttatgttttgttcaggatattcattcccaaatgagtcaaagcaatccattttgttctctg |
1308571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 95 - 293
Target Start/End: Complemental strand, 1309468 - 1309270
Alignment:
| Q |
95 |
gaaataatactctgatcatgaccttgatcaannnnnnnnggaacattatcagaattgttaaaggctagtgactcggttagaatttgagtcttcgagtgta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1309468 |
gaaataatactctgatcatgaccttgatcaattttttttggaacattatcagatttgttaaaggctagtgactcggttagaatttgagtcttcgagtgta |
1309369 |
T |
|
| Q |
195 |
gatcatttttctgtccatccttcaacatgcaagaagatttcaaaagctgctttggatttgaagagggctgagctattttatttgtagaccgggtcacca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||| |
|
|
| T |
1309368 |
gatcatttttctgtccatccttcaacatgcgagaagatttcaaaagctgctttggatttgaagagggctgggctactttattggtagactgggtcacca |
1309270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 1309546 - 1309503
Alignment:
| Q |
17 |
cagaaagaactcaccttagaagtcatgaagttatcttcttccgc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1309546 |
cagaaagaactcaccttagaagtcatgaagttatcttctgccgc |
1309503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University