View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_20 (Length: 318)
Name: NF18623_low_20
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 15766627 - 15766707
Alignment:
| Q |
64 |
caaaaaactcctctaggctttttcctagtaatttcaatcaaattttaataaaagcatgttttgagaatcatgcatactgaa |
144 |
Q |
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| T |
15766627 |
caaaaaactcctctaggctttttcctagtaatttcaatcaaattttaataaaagcacgttttgagaatcatgcatactgaa |
15766707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 15766691 - 15766769
Alignment:
| Q |
159 |
gaatcatgcatactgaacaaactcacgtattaagaattccctttggtactttgaattattatcatttccaatgttaact |
237 |
Q |
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| T |
15766691 |
gaatcatgcatactgaacaaactcacgtattaagaattccctttggtactttgaattattatcatttccaatgtcaact |
15766769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 304
Target Start/End: Original strand, 15766768 - 15766798
Alignment:
| Q |
274 |
cttcagtttctgttataaatttgtaaaaatt |
304 |
Q |
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| T |
15766768 |
cttcagtttctgttataaatttgtaaaaatt |
15766798 |
T |
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