View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_26 (Length: 270)
Name: NF18623_low_26
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 3658680 - 3658515
Alignment:
| Q |
47 |
caaaggacataaactagtatccataccacatctagatcttttttcattagtcttcaaaccatcattataaagaaggcaaaagaaaaaacattttattctt |
146 |
Q |
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| T |
3658680 |
caaaggacataaactagcatccataccacatctagatcttttttcattagtcttcaaaccatcattataaagaaggc-aaagaaaaaacattttattctt |
3658582 |
T |
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| Q |
147 |
tgaggccctcccatttgagaaaccgtttgtagaagctgatgtgataaaaatggttgatttacaacctc |
214 |
Q |
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| T |
3658581 |
tgaggccctcccatttgaaaaaccgttcttagaaggtgatgtgataaaaatggttga-ttacaacctc |
3658515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 3658360 - 3658305
Alignment:
| Q |
214 |
cccttgatattcaggtcgacacacattcttccaagaaatagaatgccatctacgct |
269 |
Q |
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| T |
3658360 |
cccttgatatttaggtcgacacacattctccgaagaaatagaatgccatctacgct |
3658305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 3658703 - 3658675
Alignment:
| Q |
14 |
aatatgaagggcggtttacttatcaaagg |
42 |
Q |
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| T |
3658703 |
aatatgaagggcggtttacttatcaaagg |
3658675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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