View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_27 (Length: 262)
Name: NF18623_low_27
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_27 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 19544639 - 19544884
Alignment:
| Q |
17 |
aataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcactatcaagtccactggttggttcatca |
116 |
Q |
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| T |
19544639 |
aataatagtcctctgaataccatctttatgatccaaggtagcaattcttgtcataacatagtaagaagcagcactatcaagtccacttgttggttcatca |
19544738 |
T |
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| Q |
117 |
agaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttttctgacctccacttatgcctttaacaccccatcctccaattattg |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19544739 |
agaaaaagaagttttggacgtgtaaggatctcaatgcaaatgctaactctccttttctgacctccacttatgcctttaacaccccatcctccaattattg |
19544838 |
T |
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| Q |
217 |
tgttagtagcatcttgcagacccatttctctgattgtaaaatcagc |
262 |
Q |
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| T |
19544839 |
tgttagtagcatcttgcagacccatttctctgattgtaaaatcagc |
19544884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 37321879 - 37321634
Alignment:
| Q |
17 |
aataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcactatcaagtccactggttggttcatca |
116 |
Q |
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||||||||||||| |||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
37321879 |
aataatagtcctccgaattccatctttatgatccaaagtagcaattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatca |
37321780 |
T |
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| Q |
117 |
agaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttttctgacctccacttatgcctttaacaccccatcctccaattattg |
216 |
Q |
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| T |
37321779 |
agaaatagaagtctaggacgtgttaggatctcaatgcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttg |
37321680 |
T |
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| Q |
217 |
tgttagtagcatcttgcagacccatttctctgattgtaaaatcagc |
262 |
Q |
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| T |
37321679 |
tgttcattgcatcttgcagacccatttctttgattgtaatatcagc |
37321634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 37330801 - 37330556
Alignment:
| Q |
17 |
aataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcactatcaagtccactggttggttcatca |
116 |
Q |
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|||||| ||||| ||||| ||||| || | ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
37330801 |
aataattgtcctttgaattccatcctttttgtccaaggaagcaattcttttcataacatagtaagaagcagcactatcaagtccactagttggctcatca |
37330702 |
T |
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| Q |
117 |
agaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttttctgacctccacttatgcctttaacaccccatcctccaattattg |
216 |
Q |
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| T |
37330701 |
agaaaaagaagtctaggacgtgttaggatctcaatgcaaatgctaactctccttttttgacccccacttatgcctttcacaccccaccctccaattcttg |
37330602 |
T |
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| Q |
217 |
tgttagtagcatcttgcagacccatttctctgattgtaaaatcagc |
262 |
Q |
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|||| | ||||||||||||||||||||| ||||||||| |||||| |
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| T |
37330601 |
tgttcattgcatcttgcagacccatttctttgattgtaatatcagc |
37330556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 48 - 262
Target Start/End: Original strand, 37346835 - 37347049
Alignment:
| Q |
48 |
tccaaggtagcaattattgtcataacatagtaagaagcagcactatcaagtccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatct |
147 |
Q |
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||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||| |||| |
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| T |
37346835 |
tccaaggaagctattcttttcataacatagtaagaagcagcactatcaagtccactagttggttcatcaagaaatagaagtcttggacgtgtaagaatct |
37346934 |
T |
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| Q |
148 |
caatgcaaatgctaactctccttttctgacctccacttatgcctttaacaccccatcctccaattattgtgttagtagcatcttgcagacccatttctct |
247 |
Q |
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||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||| ||||||| | ||||||||||||||||||||||| |
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| T |
37346935 |
caatggaaatgctaactctccttttttgacccccacttattcctttaacaccccaccctcctattcttgtgttgattgcatcttgcagacccatttctct |
37347034 |
T |
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| Q |
248 |
gattgtaaaatcagc |
262 |
Q |
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| T |
37347035 |
tattgtaaaatcagc |
37347049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 37298434 - 37298256
Alignment:
| Q |
67 |
tcataacatagtaagaagcagcactatcaagtccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactct |
166 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| | ||| | || || ||||||||||||||||| | ||| |
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| T |
37298434 |
tcataacatagtaggaagctgcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgagttagaatctcaatgcaaatgcttagtct |
37298335 |
T |
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| Q |
167 |
ccttttctgacctccacttatgcctttaacaccccatcctccaattattgtgttagtagcatcttgcagacccatttct |
245 |
Q |
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| T |
37298334 |
ccttctttgccccccgcttaggcctttggaaccataccctccaacccttgtgttaatagcatcctgcaggcccatttct |
37298256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 37291316 - 37291173
Alignment:
| Q |
67 |
tcataacatagtaagaagcagcactatcaagtccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactct |
166 |
Q |
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||||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||| | ||||| || || ||||| ||||||||||||| ||| |
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| T |
37291316 |
tcataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaagtct |
37291217 |
T |
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| Q |
167 |
ccttttctgacctccacttatgcctttaacaccccatcctccaa |
210 |
Q |
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|| | || |||||||||| |||||| |||||||||||||| |
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| T |
37291216 |
tctcctttgtcctccacttagacctttagaaccccatcctccaa |
37291173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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