View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18623_low_33 (Length: 243)

Name: NF18623_low_33
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18623_low_33
NF18623_low_33
[»] chr4 (11 HSPs)
chr4 (103-243)||(5613486-5613626)
chr4 (14-242)||(5895141-5895369)
chr4 (19-243)||(5886301-5886525)
chr4 (19-242)||(5848082-5848305)
chr4 (40-106)||(5564966-5565032)
chr4 (39-101)||(5583304-5583366)
chr4 (39-106)||(5858230-5858297)
chr4 (67-97)||(5571125-5571155)
chr4 (39-97)||(5852980-5853038)
chr4 (42-103)||(3749121-3749182)
chr4 (67-103)||(5605286-5605322)
[»] chr8 (1 HSPs)
chr8 (39-243)||(1483084-1483288)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 5613626 - 5613486
Alignment:
Q  103 accttaactacctagacctttcttctaattatttacgtggtgcaattccttcgtacctttttacacttccatcattggaggaaatttggcttgaatctaa 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5613626 accttaactacctagacctttcttctaattatttaagtggtgcaattccttcatacctttttacacttccatcattggaggaaatttggcttgaatctaa 5613527  T
Q  203 ccagtttagtaaatttaacgaattcatagatatgtcttcct 243  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5613526 ccagtttagtaaatttaacgaattcatagatatgtcttcct 5613486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 5895141 - 5895369
Alignment:
Q  14 catcagtaacatgacaaacttattggaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacacaccttaactac 113  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||  |      
T  5895141 catcggtaacatgacaaacttattggaattggatctttcttactgtcaactatatggaacacttcccaattcactgtcaaacctcacacaacttatatgg 5895240  T
Q  114 ctagacctttcttctaattatttacgtggtgcaattccttcgtacctttttacacttccatcattggaggaaatttggcttgaatctaaccagtttagta 213  Q
    ||||||||||||  |||| ||||| |||||| |||||| || |||||||||||||| |||||||||||||| ||||  |||| ||| |||||||||||||    
T  5895241 ctagacctttctcataatgatttaagtggtgtaattccatcatacctttttacactcccatcattggaggagatttatcttgcatccaaccagtttagta 5895340  T
Q  214 aatttaacgaattcatagatatgtcttcc 242  Q
    ||||| ||||||||||| || ||||||||    
T  5895341 aatttgacgaattcataaatgtgtcttcc 5895369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 5886301 - 5886525
Alignment:
Q  19 gtaacatgacaaacttattggaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacacaccttaactacctaga 118  Q
    ||||||||||||||||| |   ||||||| |||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  5886301 gtaacatgacaaacttactcctattggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacaccttaccttcctaga 5886400  T
Q  119 cctttcttctaattatttacgtggtgcaattccttcgtacctttttacacttccatcattggaggaaatttggcttgaatctaaccagtttagtaaattt 218  Q
    |||||||| |||| ||||| ||||| |||||||||| |||||||||||||| |||||||||||| | ||||| |||||||| ||||| |||||| |||||    
T  5886401 cctttcttataatgatttaagtggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaaccattttagtgaattt 5886500  T
Q  219 aacgaattcatagatatgtcttcct 243  Q
    |||||||||||| || |||||||||    
T  5886501 aacgaattcataaatgtgtcttcct 5886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 5848082 - 5848305
Alignment:
Q  19 gtaacatgacaaacttattggaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacacaccttaactacctaga 118  Q
    |||||||||||||||||||   |||||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||      
T  5848082 gtaacatgacaaacttattcctattggacctttctcactgtcaactatatggaacatttcccaattcactgtcaaacctcacacaccttaccgacctacg 5848181  T
Q  119 cctttcttctaattatttacgtggtgcaattccttcgtacctttttacacttccatcattggaggaaatttggcttgaatctaaccagtttagtaaattt 218  Q
    |||||||  |||| |||||  |||| |||||||||| |||||||||||||| ||||||||||||  |||||  |||| ||| ||||||||||||||||||    
T  5848182 cctttctcataatgatttatatggttcaattccttcatacctttttacactcccatcattggagagaatttctcttgcatccaaccagtttagtaaattt 5848281  T
Q  219 aacgaattcatagatatgtcttcc 242  Q
     ||||||||||| || ||||||||    
T  5848282 gacgaattcataaatgtgtcttcc 5848305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 5565032 - 5564966
Alignment:
Q  40 aattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacacacct 106  Q
    ||||||||||||| |  |||||| |  ||||||||||||| |||||| |||||||||||||||||||    
T  5565032 aattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacct 5564966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 5583304 - 5583366
Alignment:
Q  39 gaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcaca 101  Q
    |||||||||||||| || ||| ||||  ||||||||||||||  |||||||||||||||||||    
T  5583304 gaattggatctttcgaattgtgaacttaatggaacacttcccttttcactgtcaaacctcaca 5583366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 5858297 - 5858230
Alignment:
Q  39 gaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacacacct 106  Q
    |||||||||||||||   |||||| |  ||||||| ||||| |||||| |||||||||||||||||||    
T  5858297 gaattggatctttctttttgtcaatttaatggaacccttccaaattcattgtcaaacctcacacacct 5858230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 5571125 - 5571155
Alignment:
Q  67 atggaacacttcccaattcactgtcaaacct 97  Q
    |||||||||||||||||||||||||||||||    
T  5571125 atggaacacttcccaattcactgtcaaacct 5571155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 5852980 - 5853038
Alignment:
Q  39 gaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacct 97  Q
    ||||||||||||||||| | |||| |  |||||||||||||||||||| | ||||||||    
T  5852980 gaattggatctttctaattctcaatttaatggaacacttcccaattcattttcaaacct 5853038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 3749182 - 3749121
Alignment:
Q  42 ttggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacaca 103  Q
    ||||||||||||   |||||| |  ||||||||||||| |||||| ||||||||||||||||    
T  3749182 ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacaca 3749121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 5605322 - 5605286
Alignment:
Q  67 atggaacacttcccaattcactgtcaaacctcacaca 103  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  5605322 atggaacactttccaattcattgtcaaacctcacaca 5605286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 1483288 - 1483084
Alignment:
Q  39 gaattggatctttctaagtgtcaactatatggaacacttcccaattcactgtcaaacctcacacaccttaactacctagacctttcttctaattatttac 138  Q
    |||||||||||| || | |||||| |  |||||||||||||||||||| |||| ||||||||||||||||  |||||||||||||||   ||  ||||||    
T  1483288 gaattggatcttccttactgtcaatttaatggaacacttcccaattcaatgtccaacctcacacaccttacatacctagacctttctcaaaacaatttac 1483189  T
Q  139 gtggtgcaattccttcgtacctttttacacttccatcattggaggaaatttggcttgaatctaaccagtttagtaaatttaacgaattcatagatatgtc 238  Q
    ||||||  |||||||| | |||||||||||| |||||| | ||| | |||| ||||| ||  ||| |||||| |||| || | ||||||||| || ||||    
T  1483188 gtggtgtcattccttcatccctttttacactcccatcaatagagaagattttgcttgcattcaacaagtttattaaacttgatgaattcataaatgtgtc 1483089  T
Q  239 ttcct 243  Q
    |||||    
T  1483088 ttcct 1483084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University