View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18623_low_34 (Length: 239)

Name: NF18623_low_34

Description: NF18623

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18623_low_34

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 134; E-Value: 7e-70

Query Start/End: Original strand, 94 - 239

Target Start/End: Original strand, 2708531 - 2708676

Alignment:

Q	94	aacaatatacaaacatttgcattagtgctaaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2708531	aacaatatacaaacatttgcattagtgcttaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta	2708630	T

Q	194	tattgataggctacgagacaaacccaacctcataggaggcatatct	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	2708631	tattgataggctaccagacaaacccaacctcatcggaggcatatct	2708676	T

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Target: chr5; HSP #2

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 165 - 231

Target Start/End: Original strand, 2702663 - 2702729

Alignment:

Q	165	accttgtctgcactatgcttcaacttgtatattgataggctacgagacaaacccaacctcataggag	231	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	2702663	accttgtctgcactgaacttcaacttgtatcttgataggctatgagacaaacccaagctcatcggag	2702729	T

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