View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_37 (Length: 221)
Name: NF18623_low_37
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_37 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 42939467 - 42939260
Alignment:
| Q |
10 |
aagaaaatatgagtcaacatgcacacaaattgatcgatttnnnnnnntacacatattgacaaagatcattagtgatacctacaacaaaacacgtaacaat |
109 |
Q |
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| T |
42939467 |
aagaaaatatgagtcaacatgcacacaaattaatcgattttaaaaaatacacatattgacaaagatcattagtgatacctacaacaaaacacgtaacaat |
42939368 |
T |
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| Q |
110 |
ttgtactgcaaaggaacttaattatttccatgaaataacaactaattagaattgacataggtagctaaaaaatgttgcatggaagaataaaattggtggt |
209 |
Q |
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| T |
42939367 |
ttgtactgcaaaggaactta----tttccatgaaataacaactaattagaattgacataggtagctaaaaaatgttgcatggaagaataaaattggtggt |
42939272 |
T |
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| Q |
210 |
gttagtgtttta |
221 |
Q |
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|||||||||||| |
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| T |
42939271 |
gttagtgtttta |
42939260 |
T |
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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 9350771 - 9350556
Alignment:
| Q |
12 |
gaaaatatgagtcaacatgcacacaaattgatcgatttnnnnnnntacacatattgacaaagatcattagtgatacctacaacaaaacacgtaaca---- |
107 |
Q |
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| T |
9350771 |
gaaaatatgagtcaacatgcacacatattgctcgattttaaaaaatgcacctattgacaaagatcattagtgatatgtataacaaaatacataacagagc |
9350672 |
T |
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| Q |
108 |
-atttgtactgcaaaggaacttaatt--attt--ccatgaaataacaactaattagaattgacataggtagctaaaaaatgttgcat-ggaagaataaaa |
201 |
Q |
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| T |
9350671 |
aatttgtact---aggaaacttatttcaacttacccatggaatcacaactaatttgaattgacataggtagcta-aaaatgttgcatgggaagaataaaa |
9350576 |
T |
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| Q |
202 |
ttggtggtgttagtgtttta |
221 |
Q |
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| T |
9350575 |
ttggttttgttagtgtttta |
9350556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 9330981 - 9330908
Alignment:
| Q |
147 |
acaactaattagaattgacataggtagctaaaaaatgttgcat-ggaagaataaaattggtggtgttagtgtttt |
220 |
Q |
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| T |
9330981 |
acaactaatttcaattgacatacgtagcta-aaaatgttgcatgggaagaataaaattggctgtgttagtatttt |
9330908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 9331080 - 9331052
Alignment:
| Q |
58 |
acacatattgacaaagatcattagtgata |
86 |
Q |
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| T |
9331080 |
acacatattgacaaagatcattagtgata |
9331052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 31087919 - 31087956
Alignment:
| Q |
12 |
gaaaatatgagtcaacatgcacacaaattgatcgattt |
49 |
Q |
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| T |
31087919 |
gaaaatatgagttaacatgcacacatattgatcgattt |
31087956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 51054930 - 51054885
Alignment:
| Q |
177 |
aaaaatgttgcatgg-aagaataaaattggtggtgttagtgtttta |
221 |
Q |
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| T |
51054930 |
aaaaatgttgcatgggaagaataaaattggttgtgttagggtttta |
51054885 |
T |
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