View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18623_low_4 (Length: 654)

Name: NF18623_low_4
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18623_low_4
NF18623_low_4
[»] chr1 (1 HSPs)
chr1 (1-639)||(8446826-8447470)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 8447470 - 8446826
Alignment:
Q  1 aatccaattccaactcatctctctcaacatgtccaaagctgaacacagaaaacctgatttcctcaaaatccatgtaataataataat---------tcat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  8447470 aatccaattccaactcatctctctcaacatgtccaaagctgaacacagaaaacctgatttcctcaaaatccatgtaataataataataataataattcat 8447371  T
Q  92 acacttcacttcttctaccttgttgttatgttagtcatcatcataattttc-acattgcttgtttaattttcagccatttggtcaagtacctgcatatca 190  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447370 acacttcacttcttctaccttgttgtta-----gtcatcatcataatttttgacattgcttgtttaattttcagccatttggtcaagtacctgcatatca 8447276  T
Q  191 agatcacgacatttctctcttcggtaagtaattcattcattaatt-aatcagttgcttcttacttaattaataatcaattagtattttcaattttaattg 289  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8447275 agatcacgacatttctctcttcggtaagtaattcattaattaatttaatcagttgcttcttacttaattaataatcaattagtattttcaatttaaattg 8447176  T
Q  290 tataacatcagagtcaagagctatatgtcggtacgtatgtgagaaaaatagagagaaagggaacaaacaactgtatgatacaaatccattggcaaaggct 389  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8447175 tataacatcagagtcaagagcgatatgtcggtacgtatgcgagaaaaatatagagaaagggaacaaacaactgtatggtacaaatccattggcaaaggct 8447076  T
Q  390 tcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttcaactctggtgtttcagcttgcatttgctcctcgaatgaagatcaaac 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447075 tcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttcaactctggtgtttcagcttgcatttgctcctcgaatgaagatcaaac 8446976  T
Q  490 aagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttggctggtgatga 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446975 aagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttggctggtgatga 8446876  T
Q  590 gttcacacttgccgacctttcacatcttcccaatattcactacttggtgg 639  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8446875 attcacacttgccgacctttcacatcttcccaatattcactacttggtgg 8446826  T

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