View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_5 (Length: 623)
Name: NF18623_low_5
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 42292472 - 42292882
Alignment:
| Q |
19 |
ggtcactacaggaaaccatgatgttgagaagattccagttgtccacgaagagccattcacagcatacaatgcaaggtggcaaatgccatttgaagaaagt |
118 |
Q |
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| T |
42292472 |
ggtcactacaggaaaccatgatgttgagaagattccagttgtccacgaagagccattcacagcatacaatgcaaggtggcaaatgccatttgaagaaagt |
42292571 |
T |
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| Q |
119 |
ggatcagattctaacctttattattcttttgatgtgtccggtgttcatgttatcatgttgggttcttataccgattttgcaccggattcttcacaataca |
218 |
Q |
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| T |
42292572 |
ggatcagattctaacctttattattcttttgatgtgtctggtgttcatgttatcatgttgggttcttataccgattttgcaccggattcttcacaataca |
42292671 |
T |
|
| Q |
219 |
aatggcttcaaggggatttacagaaggttaacaggggaaaaactccttgggtagtggtgttggttcatgctccttggtataattctaatcaagctcatca |
318 |
Q |
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| T |
42292672 |
aatggcttcaaggggatttacagaagattaacaggggaaaaactccttgggtagtggtgttggttcatgctccttggtataattctaatcaagctcatca |
42292771 |
T |
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| Q |
319 |
gggtgaggctgaatctgttgacatgaagactgcaatggaaggtttgctctataatgcacttgttgatgtcgtttttacagggcatgttcatgcctacgaa |
418 |
Q |
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| T |
42292772 |
gggtgaggctgaatctgttgacatgaagactgcaatggaaggtttgctctataatgcacttgttgatgtcgtttttacagggcatgttcatgcatacgaa |
42292871 |
T |
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| Q |
419 |
cgctttgtaag |
429 |
Q |
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| T |
42292872 |
cgctttgtaag |
42292882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 548
Target Start/End: Original strand, 42292911 - 42292943
Alignment:
| Q |
516 |
tctagttgaagtactggttcaatcgggttgaaa |
548 |
Q |
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| T |
42292911 |
tctagttgaagtgctggttcaatcgggttgaaa |
42292943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 40336267 - 40336191
Alignment:
| Q |
99 |
aaatgccatttgaagaaagtggatcagattctaacctttattattcttttgatgtgtccggtgttcatgttatcatg |
175 |
Q |
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| T |
40336267 |
aaatgccgtttgaggaaagtggatcaacttcaaatctctattattcatttgaagttgcaggtgttcatgttatcatg |
40336191 |
T |
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