View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18623_low_9 (Length: 443)
Name: NF18623_low_9
Description: NF18623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18623_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 149157 - 149031
Alignment:
| Q |
1 |
tttttaccaagtaatctaacagctaaaaattcatccataaagatgaataaatggtgtgtttgtagttc-aacccttctacatataatgcaatgtttaata |
99 |
Q |
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| T |
149157 |
tttttaccaagtaatctaacaactaaaaattcatccataaagatgaataagcggtgtgtttgtagttcaaacccttctatatataatgcaatgtttaata |
149058 |
T |
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| Q |
100 |
agcattaaaaagttatataattgactc |
126 |
Q |
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| T |
149057 |
agcattaaaaaattatataatcgactc |
149031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 154311 - 154236
Alignment:
| Q |
132 |
caaatggctctttttattagttgagacatcattgatgaaaagtaggtgcagctgtgcctgaaacatctgtttccac |
207 |
Q |
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|
| T |
154311 |
caaatgtctctttttttaagttgagccatcattgatgaaaagtaagtgcatttgtgcctgaaatatctgtttccac |
154236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 154535 - 154485
Alignment:
| Q |
80 |
atataatgcaatgtttaataagcattaaaaagttatataattgactcgcta |
130 |
Q |
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| T |
154535 |
atattatgtaatgtttaataaacattaaaaagtcatataattgtctcgcta |
154485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 7668677 - 7668718
Alignment:
| Q |
271 |
aagttaatgattcaaatataaaaataaattatcgaaatatgt |
312 |
Q |
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|
| T |
7668677 |
aagttaatgattcaaatatagaaataacttattgaaatatgt |
7668718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 36434673 - 36434718
Alignment:
| Q |
273 |
gttaatgattcaaatataaaaataaattatcgaaatatgtacattg |
318 |
Q |
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||||||||||||||||||||||||| |||| ||||| ||| ||||| |
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|
| T |
36434673 |
gttaatgattcaaatataaaaataatttattgaaatgtgtgcattg |
36434718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 4993379 - 4993335
Alignment:
| Q |
253 |
tttgtgcttttaatgtataagttaatgattcaaatataaaaataa |
297 |
Q |
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| T |
4993379 |
tttgtgctcttaaggcataagttaatgattcaaatatagaaataa |
4993335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 42549336 - 42549291
Alignment:
| Q |
254 |
ttgtgcttttaatgtataagttaatgattcaaatataaaaataaat |
299 |
Q |
| |
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|||||| ||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
42549336 |
ttgtgcctttaaggtacaagttaatgattcaaatataaaaataaat |
42549291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 49447685 - 49447657
Alignment:
| Q |
274 |
ttaatgattcaaatataaaaataaattat |
302 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
49447685 |
ttaatgattcaaatataaaaataaattat |
49447657 |
T |
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