View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18624_high_12 (Length: 306)
Name: NF18624_high_12
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 2524470 - 2524760
Alignment:
| Q |
1 |
agaagattcaaccattcaagcaggtaatcaaagtcaaattattttttcttatatataaacactatcaatttaatattttatagatgcatctaaaaatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2524470 |
agaagattcaaccattcaagcaggtaatcaaagtcaaattattttttcttatatataaacactatcaatttaatattttatagatgcatctaaaaatgta |
2524569 |
T |
|
| Q |
101 |
ttctcaacc-aagggttactatgctactaaggatgtttagtcatccataacgttttgagtttaaattccgtcgttagtgtgaaattagtctacaccacnn |
199 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2524570 |
ttgtcaaccaaagggttactatgctactaaggatgttgagtcatccataacgttttgagtttaacttccgttgttagtgtgaaattagtctacaccactt |
2524669 |
T |
|
| Q |
200 |
nnnnnattgccaaatctcaaatttgtgcctcttattttttgtaagatggtgtcaacttgaaggagaagaaaaagcaagatggggtctttga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2524670 |
tttttattgccaaatctcaaatttgtgcctcttattttttgtaagatggtgtcaacttgaaggagaagaaaaagcaagatggggtctttga |
2524760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University