View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_high_2 (Length: 526)
Name: NF18624_high_2
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 49402920 - 49403424
Alignment:
| Q |
1 |
ccggagaggattttcgggaagatgagtcatttgcagaggcttttggatcgtttcttggcttgtaggccaactgggttggctaagaacaataggatgattt |
100 |
Q |
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| T |
49402920 |
ccggagaggattttcgggaagatgagtcatttgcagaggcttttggatcgtttcttggcttgtaggccaactgggttggctaagaacaataggatgattt |
49403019 |
T |
|
| Q |
101 |
tgattgcgttgtatccgttggttaaggagagttttcagttgtatgctgatatatgtgaggttttggcagtgttgcttgacaaattctttgatatggagta |
200 |
Q |
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| T |
49403020 |
tgattgcgttgtatccgttggttaaggaaagttttcagttgtatgctgatatatgtgaggttttggcagtgttgcttgacaaattctttgatatggagta |
49403119 |
T |
|
| Q |
201 |
tcctgattgtgtcaaggcctttgatgcttatgcaagtgctgctaaacagattgatgaacttgtggcattttacaattggtgtaaagagagtggtttggcg |
300 |
Q |
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| T |
49403120 |
tcctgattgtgtcaaggcctttgatgcttatgcaagtgctgctaaacagattgatgaacttgtggcattttacaattggtgtaaagagagtggtttggcg |
49403219 |
T |
|
| Q |
301 |
agatcctccgagtatccagaagttcagagaattactagtaagttgttggagacactggaggagtttgtgagggatagggctaagaggccaaagagtccag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49403220 |
agatcctccgagtatccagaagttcagagaattactagtaagttgttggagacactggaggagtttgtgagggatagggctaagaggccaaagagtccag |
49403319 |
T |
|
| Q |
401 |
agaggaaagaggaagctcctaagctggaagtacaagaggaggagccggtcccggatatgaacgagatcaaggcactgcctgcacctgagaattatacccc |
500 |
Q |
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| T |
49403320 |
agaggaaagaggaagctcctaagctggaagtacaagaggaggagccggtcccggatatgaacgagatcaaggcactgcctgcacctgagaattatacccc |
49403419 |
T |
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| Q |
501 |
gcctc |
505 |
Q |
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| T |
49403420 |
gcctc |
49403424 |
T |
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