View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18624_high_4 (Length: 468)

Name: NF18624_high_4
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18624_high_4
NF18624_high_4
[»] chr3 (8 HSPs)
chr3 (14-453)||(24354503-24354941)
chr3 (15-407)||(24369564-24369958)
chr3 (15-407)||(24364689-24365083)
chr3 (49-443)||(24344236-24344634)
chr3 (14-400)||(24358219-24358603)
chr3 (135-393)||(24313727-24313985)
chr3 (117-393)||(24351478-24351753)
chr3 (128-413)||(24361897-24362183)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 24354941 - 24354503
Alignment:
Q  14 gaaaggtgatctttgtctagcattcttccgattaagccattcttccaaaatctcaacagactcatcatcactatgatcaatatcatttttctcatcataa 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24354941 gaaaggtgatctttgtctagcattcttctgattaagccattcttccaaaatctcaacagactcatcatcactatgatcaatatcatttttctcatcataa 24354842  T
Q  114 ccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaacaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24354841 ccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaatctcctttatatttgaacaccaccaaacaac 24354742  T
Q  214 catgtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgccat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  24354741 catgtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattga-tttttttccaataaactttccatttagtgccat 24354643  T
Q  314 caggaggcttgatcaacactggatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaaccccttttggtca 413  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24354642 ctggaggcttgatcaacactggatttgatagaccaactccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaaccccttttggtca 24354543  T
Q  414 acaaaaggtatcaaataaatatgccttctactgtgacatg 453  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  24354542 acaaaaggtgtcaaataaatatgccttctactgtgacatg 24354503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 24369958 - 24369564
Alignment:
Q  15 aaaggtgatctttgtctagcattcttccgattaagccattcttccaaaatctcaacagactcatcatca---ctatgatcaatatcatttttctcatcat 111  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||   |||||||||| ||  |  || |||||||    
T  24369958 aaaggtgatctttgtctagccttcttccgattaagccattcatccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcat 24369859  T
Q  112 aaccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaaca 211  Q
     ||  |||||||||| ||||||||||||||||| |||||||| |||||||||   ||||||||||||  ||| |||||||||||  ||||||||||| ||    
T  24369858 cactgtcacatgaagtatcatagtctatttctaatgcattcttgccaagtattactacatcaaacttgaaagttcctttatattcaaacaccaccaagca 24369759  T
Q  212 accatgtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgcc 311  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||        |||||||||||||||||||||| |    
T  24369758 accatgtccaagagagtaattttcagtaaaagttttccaacccttttcaaaccaaatctcaccattga-tttttttccaataaactttccatttagtgtc 24369660  T
Q  312 atcaggaggcttgatcaacactggatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaaccccttt 407  Q
    |||||||| ||| |||| |||||||||||||||||||| ||||||| || ||||||||||| |||| |||| ||||||||||||||||||||||||    
T  24369659 atcaggagtctttatcaccactggatttgatagaccaactccatgtctctttgtaaacttacttggtatttgctgtaaaaattaaagaaccccttt 24369564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 24364689 - 24365083
Alignment:
Q  15 aaaggtgatctttgtctagcattcttccgattaagccattcttccaaaatctcaacagactcatcatca---ctatgatcaatatcatttttctcatcat 111  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||   |||||||||| ||  |  || |||||||    
T  24364689 aaaggtgatctttgtctagccttcttccgattaagccattcatccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcat 24364788  T
Q  112 aaccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaaca 211  Q
     |   |||| ||||| |||||| |||||||||||||||||||||||||||||   |||||||||||| |||| |||||||||||  |||| |||||||||    
T  24364789 tagtgtcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaacttggaagttcctttatattcaaacatcaccaaaca 24364888  T
Q  212 accatgtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgcc 311  Q
     |||||| ||||||||||||||||| |||||  ||||||||||||||||||||| ||||| |||||||        ||||||||||||||||  ||||||    
T  24364889 gccatgttcaagagagtaattttcagtaaaagttttccaacccttttcaaaccacatctcgccattga-tttttttccaataaactttccatccagtgcc 24364987  T
Q  312 atcaggaggcttgatcaacactggatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaaccccttt 407  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| | || ||||||||||||||||||| ||||    
T  24364988 atcaggaagcttgatcaacactggattagatagaccaactccatgtttcctagtaaacttatttggtaattgctgtaaaaattaaagaacctcttt 24365083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 49 - 443
Target Start/End: Complemental strand, 24344634 - 24344236
Alignment:
Q  49 gccattcttccaaaatctcaacagactcatcatcactatgatcaatatcatttttctcatcataaccatcacatgaaggatcatagtctatttctactgc 148  Q
    ||||||| || ||||||||||| || ||||||||||||||| ||| ||  |  || ||||||| |   |||||||||| |||||||||||||||||||||    
T  24344634 gccattcatctaaaatctcaactgattcatcatcactatgaccaacattgtcattttcatcatcagtgtcacatgaagtatcatagtctatttctactgc 24344535  T
Q  149 attctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaacaaccatgtccaagagagtaattttcaataaaatatttc 248  Q
    |||| | ||||||||   ||||||||| || |||| |||||||||||  |||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  24344534 attccgaccaagtattactacatcaaatttcgaagttcctttatattcaaacaccaccaaagagccatgtccaagagagtaattttcagtaaaatatttc 24344435  T
Q  249 caacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgccatcaggaggcttgatcaacactggatttgatagacca 348  Q
    ||||||||||||||||||||||| |||| ||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24344434 caacccttttcaaaccaaatctcaccatcga-tttttttccaataaactttccatttagtgccatctggaggcttgatcaacactggatttgatagacca 24344336  T
Q  349 attccatgtttccttgtaaacttatttggaattttctgtaaaaatt-aaagaaccccttttggtc----aacaaaaggtatcaaataaatatgccttcta 443  Q
    | |||||||||| |||||||||||| ||| |||||||||||||||| |||||| || ||||||||    |||||||||| |||||| | ||| |||||||    
T  24344335 actccatgtttctttgtaaacttatgtggtattttctgtaaaaattaaaagaagccgttttggtcattaaacaaaaggtgtcaaattagtattccttcta 24344236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 24358603 - 24358219
Alignment:
Q  14 gaaaggtgatctttgtctagcattcttccgattaagccattcttccaaaatctcaacagactcatcatca---ctatgatcaatatcatttttctcatca 110  Q
    |||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||| || |||||||||   |||||||||| ||  |  || ||||||    
T  24358603 gaaaggtgatctttgtttagccttcttccaattaagccattcgtccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatca 24358504  T
Q  111 taaccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaac 210  Q
    | ||  |||||||||| || ||   ||||||||||||||||| ||||||  ||||||||||||||||| |||| || ||||||||  ||||| ||||||     
T  24358503 tcactgtcacatgaagaataat---ctatttctactgcattccggccaaaaatgtgtacatcaaacttggaagttcttttatattcaaacacaaccaaag 24358407  T
Q  211 aaccatgtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgc 310  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||    
T  24358406 agccatgtccaagagagtaattttcagtaaaatatttccaacccttttcaaaccaaatctcgccattga-tttttttccaataaactttccatttagtgc 24358308  T
Q  311 catcaggaggcttgatcaacactggatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaa 400  Q
    ||||||||||||| ||||||||||||||||||| |  || ||||| | |||| |||||||||||||| |||| ||| |||||||||||||    
T  24358307 catcaggaggctttatcaacactggatttgataaatgaactccatatctcctagtaaacttatttggtatttgctg-aaaaattaaagaa 24358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 135 - 393
Target Start/End: Complemental strand, 24313985 - 24313727
Alignment:
Q  135 tctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaacaaccatgtccaagagagtaatttt 234  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  24313985 tctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttcctttatatttgaacattaccaaacacccatgtccaagagagtaatttt 24313886  T
Q  235 caataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgccatcaggaggcttgatcaacactg 334  Q
    || ||||| ||||||||||| |||||||||||||||| |||||||        |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  24313885 cagtaaaaaatttccaacccctttcaaaccaaatctcaccattgattttttttccaatacactttccatttagtgccatcaggaggctttatcaacactg 24313786  T
Q  335 gatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaat 393  Q
    ||||||||||||||| ||||||| |||||||||| |||||||| |||| ||||||||||    
T  24313785 gatttgatagaccaactccatgtctccttgtaaaattatttggtatttgctgtaaaaat 24313727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 117 - 393
Target Start/End: Complemental strand, 24351753 - 24351478
Alignment:
Q  117 tcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctcctttatatttgaacaccaccaaacaaccat 216  Q
    |||||||||| ||||||||||||||| || ||||| |  ||||||||  ||||||||||||| |||| |||||||||||| |||||||||||||| ||||    
T  24351753 tcacatgaagaatcatagtctatttcaaccgcattattaccaagtattagtacatcaaacttggaagttcctttatatttaaacaccaccaaacatccat 24351654  T
Q  217 gtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgccatcag 316  Q
    ||   ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||        ||| |||||||||||||||||||||||||    
T  24351653 gttgtagagagtaattttcagtaaaatgtttccaacccttttcaaaccaaatctcaccattga-tttttttccagtaaactttccatttagtgccatcag 24351555  T
Q  317 gaggcttgatcaacactggatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaat 393  Q
    ||| |||||||||||||||||||| |||||||| ||||| | |||||||||| |||||||| |||| ||||||||||    
T  24351554 gagccttgatcaacactggatttgttagaccaactccatatctccttgtaaaattatttggtatttgctgtaaaaat 24351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 128 - 413
Target Start/End: Complemental strand, 24362183 - 24361897
Alignment:
Q  128 atcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaagctccttt---atatttgaacaccaccaaacaaccatgtccaaga 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||   ||||| |||| |||||    ||| || |||| ||||||| | ||||||||||||    
T  24362183 atcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcataattaaacaacaccaaaaacccatgtccaaga 24362084  T
Q  225 gagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccattgannnnnnnnccaataaactttccatttagtgccatcaggaggcttg 324  Q
    |||||||||||| |||||  ||||||||||||||| ||||||||||| |||||||        ||||||||||||||||||||| |||||||||||||||    
T  24362083 gagtaattttcagtaaaagttttccaacccttttcgaaccaaatctcaccattgattttttt-ccaataaactttccatttagttccatcaggaggcttg 24361985  T
Q  325 atcaacactggatttgatagaccaattccatgtttccttgtaaacttatttggaattttctgtaaaaattaaagaaccccttttggtca 413  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||| |||||| ||||||||||||| ||||| || ||||||||||||    
T  24361984 atcaacactggatttgacagaccaactccatgtctccttgtaaactcatttggtattttctgtaaaatttaaacaa-cccttttggtca 24361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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