View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_high_5 (Length: 412)
Name: NF18624_high_5
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 43357672 - 43357288
Alignment:
| Q |
18 |
aatggtaaatcccatgttgccacaaccaatacaaagacaattactagaaacagttggtgttccttccaaaatctttccaagccaacccatttcatgcaaa |
117 |
Q |
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| T |
43357672 |
aatggtaaatcccatgttgccacaaccaatacaaagacaatcactagaaacagttggtgttccttccaaaatctttccaagccaacccatttcatgcaaa |
43357573 |
T |
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| Q |
118 |
ccaaacacttcatcagctcctccaatgtatcttcctttgataaaaagctttggaggaatcactttctctcccaatatattccacaactcttgtctgtatt |
217 |
Q |
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| T |
43357572 |
ccaaacacttcatcagctcctccaatgtatcttcctctgataaaaagctttggaggaatcactttctctcccaatatattccacaactcttgtctgtatt |
43357473 |
T |
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| Q |
218 |
ccaagtccagagacacatctctttcatgatacattactcttaaacttctcaacaagaaatggattgtgttgcaatcttgaaatgttttccttattcctct |
317 |
Q |
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| T |
43357472 |
ccaagtccagagacacatctctttcatgatacattactcttaaacttctcaacaagaaatggattgtgttgcaatcttgaaatgttttccttattcctct |
43357373 |
T |
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| Q |
318 |
caaacttgttgtgtaaagaatgattgaattgcttcctcctggtggacacttttcttcaaaatctttaagtgatggataccctttg |
402 |
Q |
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| T |
43357372 |
caaacttgttgtgtaaagaatgattgaattgcttcctcctggtggacacttttcttcaaaatctttaagtgatggataccctttg |
43357288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 24571207 - 24571097
Alignment:
| Q |
72 |
tggtgttccttccaaaatctttccaagccaacccatttcatgcaaaccaaacacttcatcagctcctccaatgtatcttcctttgataaaaagctttgga |
171 |
Q |
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|||| |||| ||||||| || |||||| ||| |||| |||||||| | | ||||||||| ||||||||||||| ||| || | || ||||||||| || |
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| T |
24571207 |
tggtattccatccaaaagctatccaagacaatccatctcatgcaatcttataacttcatcaactcctccaatgtacctttctattatgaaaagctttaga |
24571108 |
T |
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| Q |
172 |
ggaatcacttt |
182 |
Q |
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| T |
24571107 |
ggaatcacttt |
24571097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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