View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_high_6 (Length: 395)
Name: NF18624_high_6
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 34728783 - 34729158
Alignment:
| Q |
1 |
aggttttagttgacaagctgttataattggcattagaacaaaacatatattagatttatataattaacagatgacgagggttattttggattcagaaaac |
100 |
Q |
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| T |
34728783 |
aggttttagttgacaagctgttataattggcattagaacagaacatatattagatttatataattaacagatgacgagggttattttggattcagaaaac |
34728882 |
T |
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| Q |
101 |
attttttattttcagttggaattataaagagagttcaatgagcttatactccgacatccaatgagaaaccaaaatttatccatgccgtactactaatttc |
200 |
Q |
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| T |
34728883 |
attttttattttcagttggaattataaagagagttcaatgagcttatactccgacatccaatgagaaaccaaaatttatccatgccgtactactaatttc |
34728982 |
T |
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| Q |
201 |
aaaatatccttataataaatagtgaggtgaccgctaaaacaataggttttcattggatgtcagtcaatgtaaaactattttacaccaacactgtatatcc |
300 |
Q |
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| T |
34728983 |
aaaatatccttataataaatagtgaggtgaccgctaaaacaataggttttcattggat----ctcaatgtaaaactattttacaccaacactgtatatcc |
34729078 |
T |
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| Q |
301 |
tttaaatcctttattgaaggttaccaatatttggaaacagaaatgagatgaaaataattcccaaacaggctctacaatgt |
380 |
Q |
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| T |
34729079 |
tttaaatcctttattgaaggttaccaatatttggaaacagaaatgagatgaaaataattcccaaacgggctctacaatgt |
34729158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 285
Target Start/End: Original strand, 34724747 - 34724896
Alignment:
| Q |
130 |
agagttcaatgagcttatactccgacatccaatgagaaaccaaaatttatccatgccgta--ctactaatttcaaaatatccttataataaatagtgagg |
227 |
Q |
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| T |
34724747 |
agagttcaatgagcatgtactctgatatcagatgagaaaccaccatttatccatatcatactctactaatctcaaaacatcctta----caatagtgagg |
34724842 |
T |
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| Q |
228 |
tgaccgctaaaacaataggttttcattggatgtcagtcaatgtaaaactattttacac |
285 |
Q |
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| T |
34724843 |
tgattgacaaaacaataggttttcattggatgttag----tgtaaaactattttacac |
34724896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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