View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_high_7 (Length: 392)
Name: NF18624_high_7
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 19344549 - 19344918
Alignment:
| Q |
13 |
attctttgcatttgtatttcaagaaaggaagagtgggggacgatccaaacgcggaggagcgactagaagagtgcgagaatgtggacaatgctatcaaaga |
112 |
Q |
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| T |
19344549 |
attctttgcatttgtatttcaagaaaggaagagtgggggacgatccaagcgcggaggagcgactagaagagtgcgagaatgtggacaatgctatcaaaga |
19344648 |
T |
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| Q |
113 |
gtttgtgaggctctttgaggaaataacaggaaatgagtttgaatcatgggaaagagataagaaatttcaaaagaaaccactgaagttttaccccattgac |
212 |
Q |
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| T |
19344649 |
gtttgtgaggctctttgaggaaataacaggaaatgagtttgaatcatgggaaagagagaagaaatttcaaaagaaaccactgaagttttaccccattgac |
19344748 |
T |
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| Q |
213 |
atggtacatatatattacttcccataaatgatgatttatcactcctgtttttggttaaacatatatagcattatggcattgaataggatgatggagttga |
312 |
Q |
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| T |
19344749 |
atggtacatatatattacttcccataattgatgatttatcactcctgtttttggttaaacatatatagcattatggcattgaataggatgatggagttga |
19344848 |
T |
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| Q |
313 |
agttagacacggggcattaggtcttcgacagctggggatagcagcgacacactgtaaacttgagcctatg |
382 |
Q |
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| T |
19344849 |
agttagacacggggcattaggtcttcggcagctggggatagcagcgacacactgtaaacttgagcctatg |
19344918 |
T |
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