View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18624_high_8 (Length: 382)

Name: NF18624_high_8
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18624_high_8
NF18624_high_8
[»] chr7 (6 HSPs)
chr7 (1-366)||(18780194-18780560)
chr7 (3-119)||(4042745-4042861)
chr7 (68-125)||(21556663-21556720)
chr7 (51-118)||(18779130-18779197)
chr7 (68-125)||(22189530-22189587)
chr7 (73-125)||(26703333-26703385)
[»] chr3 (3 HSPs)
chr3 (1-226)||(1605434-1605662)
chr3 (283-366)||(1605662-1605745)
chr3 (66-118)||(3650791-3650843)
[»] chr8 (1 HSPs)
chr8 (21-125)||(10150181-10150285)
[»] chr2 (1 HSPs)
chr2 (3-50)||(28781205-28781252)
[»] chr1 (2 HSPs)
chr1 (63-125)||(17645771-17645833)
chr1 (3-39)||(39252706-39252741)
[»] chr5 (3 HSPs)
chr5 (7-64)||(34980429-34980486)
chr5 (65-125)||(34980221-34980281)
chr5 (3-43)||(34980525-34980565)


Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 18780194 - 18780560
Alignment:
Q  1 accaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcactacctcttcctttacaattctaagcattttgggactt 100  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18780194 accaagtgatggaaccaccatgcttgtgttgaacttcaagaaataaccttacttgtcttgcactacctcttcctttacaattctaagcattttgggactt 18780293  T
Q  101 tt-tcaacatgtatatttttaaccaagacacctgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatac 199  Q
    || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780294 ttttcaacatgtatattttcaaccaagacacatgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatac 18780393  T
Q  200 tcgtagagaatcattttgataaaaggtcgtaaaattaatacaagtgatgctcttatatagagctagaaaggggattaacaaactaacttcctaatgataa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18780394 tcgtagagaatcattttgataaaaggtcgtaaaattaatacaagtgatgctcttatatagagctagaaaggggattaacaaactaacttcctaataataa 18780493  T
Q  300 actctaactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780494 actctaactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatc 18780560  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 4042861 - 4042745
Alignment:
Q  3 caagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcactacctcttcctttacaattctaagcattttgggactttt 102  Q
    ||||||||||||| | | || || ||||  ||||||||||| || |||  |||| ||| |||||||||||||||| ||||||||||| | ||  | ||||    
T  4042861 caagtgaaggaactatcttgtttatcttacacttcaagaaacaatcttcattattttgtactacctcttcctttataattctaagcaatgtgatattttt 4042762  T
Q  103 tcaacatgtatattttt 119  Q
    || ||||||||||||||    
T  4042761 tcgacatgtatattttt 4042745  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 21556720 - 21556663
Alignment:
Q  68 tcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 125  Q
    |||||||||||||||||||||| | || ||||||||||||||||| ||| | ||||||    
T  21556720 tcttcctttacaattctaagcaatgtgagactttttcaacatgtacattatcaaccaa 21556663  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 18779130 - 18779197
Alignment:
Q  51 acttatcttgcactacctcttcctttacaattctaagcattttgggactttttcaacatgtatatttt 118  Q
    |||| |||||||||||||||| ||||| ||||||||||| | ||  |||  |||||||||||||||||    
T  18779130 acttgtcttgcactacctcttactttataattctaagcaatgtgacactccttcaacatgtatatttt 18779197  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 22189530 - 22189587
Alignment:
Q  68 tcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 125  Q
    |||||||||||||| ||||||| | || ||||| ||||| ||||||||||| ||||||    
T  22189530 tcttcctttacaatactaagcaatgtgtgacttcttcaatatgtatattttcaaccaa 22189587  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 26703333 - 26703385
Alignment:
Q  73 ctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 125  Q
    |||||||||| |||||| | || ||||| ||||||||||||||||| ||||||    
T  26703333 ctttacaattataagcaatgtgagacttcttcaacatgtatattttcaaccaa 26703385  T

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Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1605434 - 1605662
Alignment:
Q  1 accaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcac--tacctcttcctttacaattctaagcattttgggac 98  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || ||||||||  |||||||||||||||||||||||||||  ||||||    
T  1605434 accaagtgaaggaaccaccttgcttgtcttgcacttcaagaaacaaccttaattgtcttgcacactacctcttcctttacaattctaagcatcgtgggac 1605533  T
Q  99 tttttcaacatgtatatttttaaccaagacacc-tgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataat 197  Q
    || ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  1605534 ttcttcaacatgtatattttcaaccaacacaccatgttaaaattttgaggatttggagaaattgaatgaaaagagctttaaaaggttgaatgagaataat 1605633  T
Q  198 actcgtagagaatcattttgataaaaggt 226  Q
    || || |||||||||||||||||||||||    
T  1605634 acacgaagagaatcattttgataaaaggt 1605662  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 1605662 - 1605745
Alignment:
Q  283 taacttcctaatgataaactctaactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatc 366  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1605662 taacttcctaataataaactctaactaattttgtatttcacacttaccaaataattgaactaattacttacactactaactatc 1605745  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 3650843 - 3650791
Alignment:
Q  66 cctcttcctttacaattctaagcattttgggactttttcaacatgtatatttt 118  Q
    ||||||||||||||||| |||| | | || ||| |||||||||||||||||||    
T  3650843 cctcttcctttacaattataagtaatgtgagacattttcaacatgtatatttt 3650791  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 10150285 - 10150181
Alignment:
Q  21 tgcttgtcttgaacttcaagaaataaccttacttatcttgcactacctcttcctttacaattctaagcattttgggactttttcaacatgtatattttta 120  Q
    ||||||||||| ||||||||| | ||| || ||| ||||||| ||||| |||| |||||||| |||| | | || ||||| ||||||||||||||||| |    
T  10150285 tgcttgtcttgcacttcaagatacaacattgcttgtcttgcattaccttttccattacaattttaagtaatgtgagacttcttcaacatgtatattttca 10150186  T
Q  121 accaa 125  Q
    |||||    
T  10150185 accaa 10150181  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 28781205 - 28781252
Alignment:
Q  3 caagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacctt 50  Q
    ||||||||||||||||| || |||||||| ||||||||||||| ||||    
T  28781205 caagtgaaggaaccaccttgattgtcttgcacttcaagaaatatcctt 28781252  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 17645771 - 17645833
Alignment:
Q  63 ctacctcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 125  Q
    ||||| ||||||||||||||||||||| | || ||||| ||||||||| |||| || ||||||    
T  17645771 ctaccccttcctttacaattctaagcaatgtgagacttcttcaacatgcatatattcaaccaa 17645833  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 39252706 - 39252741
Alignment:
Q  3 caagtgaaggaaccaccatgcttgtcttgaacttcaa 39  Q
    ||||||||||||||||| |||||||||||||||||||    
T  39252706 caagtgaaggaaccacc-tgcttgtcttgaacttcaa 39252741  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 34980429 - 34980486
Alignment:
Q  7 tgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcact 64  Q
    |||||||| |||| |||||| |||| ||||||||||| |||||| ||| |||||||||    
T  34980429 tgaaggaatcaccttgcttgccttgcacttcaagaaacaaccttgcttgtcttgcact 34980486  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 34980281 - 34980221
Alignment:
Q  65 acctcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 125  Q
    ||||||||||||| ||||||||||| | |  ||||| || |||||||||||||| ||||||    
T  34980281 acctcttcctttataattctaagcaatgtaagacttctttaacatgtatattttcaaccaa 34980221  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 34980565 - 34980525
Alignment:
Q  3 caagtgaaggaaccaccatgcttgtcttgaacttcaagaaa 43  Q
    |||||||||||| |||| ||||||||||| |||||||||||    
T  34980565 caagtgaaggaatcaccttgcttgtcttggacttcaagaaa 34980525  T

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