View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18624_low_1 (Length: 998)

Name: NF18624_low_1
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18624_low_1
NF18624_low_1
[»] chr6 (15 HSPs)
chr6 (19-565)||(7564329-7564875)
chr6 (611-986)||(7563953-7564330)
chr6 (22-144)||(1470922-1471044)
chr6 (30-156)||(176272-176398)
chr6 (30-144)||(1459540-1459654)
chr6 (43-146)||(370782-370885)
chr6 (53-155)||(1442096-1442198)
chr6 (321-390)||(176599-176668)
chr6 (49-145)||(1453838-1453934)
chr6 (49-145)||(1465530-1465626)
chr6 (317-356)||(370569-370608)
chr6 (727-762)||(34625743-34625778)
chr6 (91-141)||(9819831-9819881)
chr6 (317-358)||(1459314-1459355)
chr6 (92-141)||(9703888-9703937)
[»] chr7 (3 HSPs)
chr7 (37-145)||(3927004-3927112)
chr7 (91-151)||(1078152-1078212)
chr7 (727-769)||(23948401-23948443)
[»] chr4 (6 HSPs)
chr4 (52-144)||(55419742-55419834)
chr4 (96-146)||(22672124-22672174)
chr4 (727-773)||(9906783-9906829)
chr4 (727-762)||(32369927-32369962)
chr4 (728-774)||(18783987-18784033)
chr4 (732-769)||(27857943-27857980)
[»] scaffold0044 (1 HSPs)
scaffold0044 (86-153)||(89137-89204)
[»] chr2 (10 HSPs)
chr2 (102-151)||(6538844-6538893)
chr2 (96-145)||(7160752-7160801)
chr2 (96-145)||(7168688-7168737)
chr2 (96-153)||(7156182-7156239)
chr2 (727-762)||(5461184-5461219)
chr2 (102-153)||(7174363-7174414)
chr2 (86-153)||(33026651-33026718)
chr2 (83-153)||(11237684-11237754)
chr2 (727-769)||(15098113-15098155)
chr2 (728-762)||(32102875-32102909)
[»] chr3 (18 HSPs)
chr3 (91-146)||(2442038-2442093)
chr3 (86-143)||(2456243-2456300)
chr3 (86-151)||(9608336-9608401)
chr3 (96-144)||(3754604-3754652)
chr3 (86-153)||(2631351-2631418)
chr3 (96-146)||(4142131-4142181)
chr3 (96-146)||(4157941-4157991)
chr3 (86-143)||(771499-771556)
chr3 (88-153)||(7324421-7324486)
chr3 (88-143)||(2644362-2644417)
chr3 (86-153)||(9561975-9562042)
chr3 (90-141)||(13498222-13498273)
chr3 (727-762)||(36302002-36302037)
chr3 (727-762)||(49636841-49636876)
chr3 (96-146)||(803215-803265)
chr3 (96-146)||(1007465-1007515)
chr3 (96-146)||(1022493-1022543)
chr3 (96-146)||(2696729-2696779)
[»] chr5 (7 HSPs)
chr5 (96-144)||(11081817-11081865)
chr5 (728-774)||(28322251-28322297)
chr5 (727-774)||(9895156-9895203)
chr5 (727-762)||(40878405-40878440)
chr5 (96-146)||(23766859-23766909)
chr5 (96-146)||(23816707-23816757)
chr5 (88-141)||(20292991-20293044)
[»] chr8 (5 HSPs)
chr8 (727-764)||(2506191-2506228)
chr8 (727-775)||(3508061-3508109)
chr8 (727-759)||(10170404-10170436)
chr8 (727-762)||(29096955-29096990)
chr8 (727-774)||(33697144-33697191)
[»] chr1 (2 HSPs)
chr1 (92-153)||(51381445-51381506)
chr1 (724-762)||(3148156-3148194)


Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Complemental strand, 7564875 - 7564329
Alignment:
Q  19 acgtctgcgttactttagcttaggggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatgga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  7564875 acgtctgcgttactttagcttaggggtttgtagggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatgga 7564776  T
Q  119 aataaggattcttggactaaattgttcagtgttccattcacagaattcattgattatttctatgcacgtctgctttttatttatgaggaggatgaccaag 218  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| | |||||||||| |||||||||||||||||||    
T  7564775 aacaaggattcttggactaaattgttcagtgttccattcaaagaattcagtgataattgctatgcacctgtgctttttatctatgaggaggatgaccaag 7564676  T
Q  219 tgttgcttgacttttgtggtaagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaaaatgtcgcttttaccgatttctcgtc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  7564675 tgttgcttgacttttgtggtaagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaaaatctcgcttttaccgatttctcctc 7564576  T
Q  319 taatgtctatgttgagagtctcatatcaccttgacctacacgctttgctatgttgggtctcagagattctccatatgtgttttcgtcttatgtgttattt 418  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7564575 taatgtctatgttgagagtctcgtatcaccttgacctacacgctttgctatgttggatctcagagattctccatatgtgttttcgtcttatgtgttattt 7564476  T
Q  419 atttaatgttgctttgagttttttgctatttttctacatattggtactgttctctgtaatatttatttactgtcatgaatttatattgtttcattctcta 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564475 atttaatgttgctttgagttttttgctatttttctacatattggtactgttctctgtaatatttatttactgtcatgaatttatattgtttcattctcta 7564376  T
Q  519 tgagcattagcaatcacccaattgttgcattcacagattccattgat 565  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7564375 tgagcattagcaatcacccaattgttccattcacagattccattgat 7564329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 611 - 986
Target Start/End: Complemental strand, 7564330 - 7563953
Alignment:
Q  611 attgatactattaacctttatcttgctaattaatgagaggtggttatgcttatgcttatgctcctgctttttcttgctatgaagcacaaacacgacaccg 710  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7564330 attgatactattaacctttatcttgctacttaatgagaggtggttatgcttatgcttatgctcctgctttttcttgctatgaagcacaaacacgacacta 7564231  T
Q  711 acttgtccattcgagaaataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactatcttggttacctagttc 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7564230 acttgtccattcgagaaataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactatcttggttacctggttc 7564131  T
Q  811 atgtgttacacaagacatgccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatcatctaacacagtgttcc 910  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564130 atgtgttacacaagacatgccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatcatctaacacagtgttcc 7564031  T
Q  911 tctcc-attgttccctttgcctcttagctttaaatacacttcttgtag-tttttgtcattgttacttgggaaaattca 986  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7564030 tctccaattgttccctttgcctcttagctttaaatacacttcttgtagttttttgtcattgttacttgggaaaattca 7563953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 1471044 - 1470922
Alignment:
Q  22 tctgcgttactttagcttaggggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaat 121  Q
    ||||||| |||||||||| ||||||| |||||||| ||||||| |||||||||| || | | ||||||||||||||||||||||||| ||||||||||||    
T  1471044 tctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaat 1470945  T
Q  122 aaggattcttggactaaattgtt 144  Q
    || ||||||||| ||||||||||    
T  1470944 aaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 176272 - 176398
Alignment:
Q  30 actttagcttaggggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattc 129  Q
    |||| ||||| ||||||| |||||||||| |||||||||||||||| ||   |||||||||||||||||||  |||||| |||||||||||||| |||||    
T  176272 acttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattc 176371  T
Q  130 ttggactaaattgttcagtgttccatt 156  Q
    ||||||||||||||||| | |||||||    
T  176372 ttggactaaattgttcactcttccatt 176398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 1459654 - 1459540
Alignment:
Q  30 actttagcttaggggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattc 129  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||| || | | ||||||||||||||||||||||||| |||| ||||||||| || ||    
T  1459654 actttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatc 1459555  T
Q  130 ttggactaaattgtt 144  Q
    |||||||||||||||    
T  1459554 ttggactaaattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 370885 - 370782
Alignment:
Q  43 ggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattg 142  Q
    ||||| |||||||||||||||| |||||||||| |||| ||||||| |||   |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  370885 ggtttctagggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattg 370786  T
Q  143 ttca 146  Q
    ||||    
T  370785 ttca 370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 1442198 - 1442096
Alignment:
Q  53 gattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttc 152  Q
    |||||||||||| ||||||||||||    |||| |||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  1442198 gattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttcactgttc 1442099  T
Q  153 cat 155  Q
    |||    
T  1442098 cat 1442096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 176599 - 176668
Alignment:
Q  321 atgtctatgttgagagtctcatatcaccttgacctacacgctttgctatgttgggtctcagagattctcc 390  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| || ||| ||||| |||||||||    
T  176599 atgtctatgttgagagtctcatatcaccttgacctacttgctttgctctgctggctctcaaagattctcc 176668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 1453934 - 1453838
Alignment:
Q  49 tagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 145  Q
    |||||||||||||||| ||||||||||  |||     | ||||||||| |||||||||||| ||||||||||||| || ||||||| ||||||||||    
T  1453934 tagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 1453838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 1465626 - 1465530
Alignment:
Q  49 tagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttc 145  Q
    |||||||||||||||| ||||||||||  |||     | ||||||||| |||||||||||| ||||||||||||| || ||||||| ||||||||||    
T  1465626 tagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 1465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 317 - 356
Target Start/End: Complemental strand, 370608 - 370569
Alignment:
Q  317 tctaatgtctatgttgagagtctcatatcaccttgaccta 356  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  370608 tctaatgtctacgttgagagtctcatatcaccttgaccta 370569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Original strand, 34625743 - 34625778
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||||||| |||||||||||||||||||    
T  34625743 aataatttgagaaaatgaattaattgaatgtaatca 34625778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 9819881 - 9819831
Alignment:
Q  91 ggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 141  Q
    |||||||||| |||||||||| ||||||||||  || ||||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 1459355 - 1459314
Alignment:
Q  317 tctaatgtctatgttgagagtctcatatcaccttgacctaca 358  Q
    ||||||||||| |  |||||||||||||||||||||||||||    
T  1459355 tctaatgtctacgcagagagtctcatatcaccttgacctaca 1459314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 9703937 - 9703888
Alignment:
Q  92 gatatttgggttatgaaggattatggaaataaggattcttggactaaatt 141  Q
    ||||||||| |||||||||| ||||||||||  |||| ||||||||||||    
T  9703937 gatatttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 3927004 - 3927112
Alignment:
Q  37 cttaggggtttgtagggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggact 136  Q
    ||||||||||| || ||||||||| || ||||||| | | |||  |||||| |||| ||||||||||||||||||||||||||||||  |||||||||||    
T  3927004 cttaggggtttctaaggattgcttgtgtgtccttgtttacactgaaactttgttgggtatttgggttatgaaggattatggaaataaaaattcttggact 3927103  T
Q  137 aaattgttc 145  Q
    |||||||||    
T  3927104 aaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 1078212 - 1078152
Alignment:
Q  91 ggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgtt 151  Q
    |||| |||||||||||||||| ||||||||||  || || |||||||||||||||| ||||    
T  1078212 ggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtt 1078152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 727 - 769
Target Start/End: Original strand, 23948401 - 23948443
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcatacgtgt 769  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  23948401 aataatttgaaaaaatcaattaattgaatgtaatcatatgtgt 23948443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 55419742 - 55419834
Alignment:
Q  52 ggattgcttatgcgtccttgctcaaactacaacttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgtt 144  Q
    |||||||||||||||| ||||||| || |   ||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  55419742 ggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 22672174 - 22672124
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  22672174 tttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttca 22672124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 727 - 773
Target Start/End: Original strand, 9906783 - 9906829
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggt 773  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||    
T  9906783 aataattagagaaaataaattaattgaatgtaatcatatatgttggt 9906829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Complemental strand, 32369962 - 32369927
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||||||| |||||||||||||||||||    
T  32369962 aataatttgagaaaatgaattaattgaatgtaatca 32369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 728 - 774
Target Start/End: Original strand, 18783987 - 18784033
Alignment:
Q  728 ataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 774  Q
    ||||||||||||||| || |||||||||||||| | |||||||||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgttggtg 18784033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 732 - 769
Target Start/End: Complemental strand, 27857980 - 27857943
Alignment:
Q  732 tttgagaaaataaattaattgaatgtaatcatacgtgt 769  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  27857980 tttgagaaaattaattaattgaatgtaatcacacgtgt 27857943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 89137 - 89204
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    ||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||| || ||||||    
T  89137 ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttcc 89204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 6538844 - 6538893
Alignment:
Q  102 ttatgaaggattatggaaataaggattcttggactaaattgttcagtgtt 151  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtt 6538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 7160801 - 7160752
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 145  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7160801 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 7168737 - 7168688
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttc 145  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7168737 tttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 7156239 - 7156182
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    ||||| |||||||||| ||||||||| | ||||||||| ||||||||||| |||||||    
T  7156239 tttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttcc 7156182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Complemental strand, 5461219 - 5461184
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||| |||||||||||||||||||||||    
T  5461219 aataatttgagataataaattaattgaatgtaatca 5461184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 7174414 - 7174363
Alignment:
Q  102 ttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    |||||||||| ||||||||| | ||||||||||||| ||||||| |||||||    
T  7174414 ttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttcc 7174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 33026651 - 33026718
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    ||||||||| |||||||||||||| | |||||||||||  | |||||||||| ||||| | |||||||    
T  33026651 tttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcc 33026718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 11237684 - 11237754
Alignment:
Q  83 acttttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    |||||||| ||| ||||| ||||| |||| ||||||||||  ||  ||||||||||||||||| |||||||    
T  11237684 acttttttcgatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttcc 11237754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 15098155 - 15098113
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcatacgtgt 769  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||    
T  15098155 aataatttgagaaaaaaaattaattgaatgtaattataagtgt 15098113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 728 - 762
Target Start/End: Complemental strand, 32102909 - 32102875
Alignment:
Q  728 ataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||||||||||||||||||| ||||||    
T  32102909 ataatttgagaaaataaattaattgaatataatca 32102875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 2442038 - 2442093
Alignment:
Q  91 ggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    |||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  2442038 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttca 2442093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 2456243 - 2456300
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 143  Q
    |||| |||| |||||||||||||||| ||||||||||| || ||||||||||||||||    
T  2456243 ttttgggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 9608401 - 9608336
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgtt 151  Q
    ||||| ||| |||||||||||||||| ||||||||||  ||||||||||||||||| | |||||||    
T  9608401 ttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtt 9608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 3754604 - 3754652
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgtt 144  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  3754604 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 2631351 - 2631418
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    |||||| || ||||| |||||||||| ||||||||| | || |||||||||||||||| |||||||||    
T  2631351 tttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcc 2631418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 4142181 - 4142131
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||||||    
T  4142181 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 4142131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 4157991 - 4157941
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||||||    
T  4157991 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 4157941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 771556 - 771499
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 143  Q
    |||| |||| |||||||||||||||| ||||||||||  || ||||||||||||||||    
T  771556 ttttgggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 7324486 - 7324421
Alignment:
Q  88 tttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    ||||||| ||||| |||||||||| || |||||||| || ||||||||||||||||  ||||||||    
T  7324486 tttggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcc 7324421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 2644417 - 2644362
Alignment:
Q  88 tttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgt 143  Q
    ||||||| ||||| |||||||||| ||||||||| | || ||||||||||||||||    
T  2644417 tttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 9562042 - 9561975
Alignment:
Q  86 tttttggatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    ||||||||| ||||| ||||||| || ||||||||| | || |||||||||||||| | |||||||||    
T  9562042 tttttggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcc 9561975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 13498222 - 13498273
Alignment:
Q  90 tggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 141  Q
    ||||| ||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13498222 tggatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Original strand, 36302002 - 36302037
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||| |||||||||||||||||||||||||||||    
T  36302002 aataatgtgagaaaataaattaattgaatgtaatca 36302037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Complemental strand, 49636876 - 49636841
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||||||| |||||||||||||||||||    
T  49636876 aataatttgagaaaatgaattaattgaatgtaatca 49636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 803265 - 803215
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||||||||||| || ||||||||||| || ||||||||||| |||||||    
T  803265 tttgggttatgaaagaatatggaaataaagagtcttggactaagttgttca 803215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 1007465 - 1007515
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||||| |||||||| ||||||||||| || || ||||||||||||||||    
T  1007465 tttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttca 1007515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 1022493 - 1022543
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||||| |||||||| ||||||||||| || || ||||||||||||||||    
T  1022493 tttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttca 1022543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 2696779 - 2696729
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||| |||||||||| ||||||||||| || ||||||| |||||||||||    
T  2696779 tttggattatgaaggaatatggaaataaagagtcttggattaaattgttca 2696729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 11081817 - 11081865
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgtt 144  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  11081817 tttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 728 - 774
Target Start/End: Original strand, 28322251 - 28322297
Alignment:
Q  728 ataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 774  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtg 28322297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 774
Target Start/End: Original strand, 9895156 - 9895203
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 774  Q
    |||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  9895156 aataatttgagaaaataaattatttgaacgtaatcacatgtgttggtg 9895203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Complemental strand, 40878440 - 40878405
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||||| |||||||||||||||||||||    
T  40878440 aataatttgagaaactaaattaattgaatgtaatca 40878405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 23766909 - 23766859
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||| ||||||| || ||||||||||| || |||||||||||||||||||    
T  23766909 tttggattatgaaagaatatggaaataaagagtcttggactaaattgttca 23766859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 23816757 - 23816707
Alignment:
Q  96 tttgggttatgaaggattatggaaataaggattcttggactaaattgttca 146  Q
    ||||| ||||||| || ||||||||||| || |||||||||||||||||||    
T  23816757 tttggattatgaaagaatatggaaataaagagtcttggactaaattgttca 23816707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 20292991 - 20293044
Alignment:
Q  88 tttggatatttgggttatgaaggattatggaaataaggattcttggactaaatt 141  Q
    ||||||| ||||| |||||||||| ||||||| ||| || ||||||||||||||    
T  20292991 tttggatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 764
Target Start/End: Original strand, 2506191 - 2506228
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcata 764  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2506191 aataattagagaaaataaattaattgaatgtaatcata 2506228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 727 - 775
Target Start/End: Original strand, 3508061 - 3508109
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgc 775  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||    
T  3508061 aataatttgagaaaataacataattcaatgtaatcatatgtgttggtgc 3508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 727 - 759
Target Start/End: Complemental strand, 10170436 - 10170404
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaa 759  Q
    |||||||||||||||||||||||||||||||||    
T  10170436 aataatttgagaaaataaattaattgaatgtaa 10170404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 762
Target Start/End: Original strand, 29096955 - 29096990
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||| |||||||||||||||||||||||||||    
T  29096955 aataatttaagaaaataaattaattgaatgtaatca 29096990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 774
Target Start/End: Complemental strand, 33697191 - 33697144
Alignment:
Q  727 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 774  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  33697191 aataatttgagaaaataaaataattgaatataaccatacgtgtcggtg 33697144  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 51381506 - 51381445
Alignment:
Q  92 gatatttgggttatgaaggattatggaaataaggattcttggactaaattgttcagtgttcc 153  Q
    ||||||||| ||||||| || ||||||||| | || ||||||||||||||||||||| ||||    
T  51381506 gatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattcc 51381445  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 724 - 762
Target Start/End: Original strand, 3148156 - 3148194
Alignment:
Q  724 agaaataatttgagaaaataaattaattgaatgtaatca 762  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  3148156 agaaataatttgagaaaataaattaatttaatataatca 3148194  T

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