View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_12 (Length: 381)
Name: NF18624_low_12
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 34728693 - 34728314
Alignment:
| Q |
8 |
cacttaattgttgattttgtgacaaataagtcaactttgtaacaaaaattttcaaaataatcaaatcgtcacacctcaatttctttaacatttatcaaat |
107 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34728693 |
cacttaattgttgattttgtgacaaacaagtcaactttgtaacaaaatttttcaaaataatcaaatcgtcacacctcaatttctttaacatttatcaaat |
34728594 |
T |
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| Q |
108 |
gagtccctccgtcagtcaattcatgtgttagatgctttaacgttcaatcttgaacattgaactagccaaattaaagacgaagtagcttac--------gt |
199 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
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| T |
34728593 |
gagtccctccgtcagtcaatttatgtgttagatgctttaacgttcaatcttgaacat------agccaaattaaagatgaagtagcttactcagggtagt |
34728500 |
T |
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| Q |
200 |
taagacttaagattaagaagaaggttgtttgattttgtcttttctggtgggccacctgtccactgtcagtctctgtgcttctctgctaattccaaatggt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
34728499 |
taagacttaagattaagaagaaggttgtttgattttgtcttttctggtgggccacctgtccactgtcagtctctgtgcttctctgctcattcgaaatggt |
34728400 |
T |
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| Q |
300 |
tggaagttggaacgctgctttgtccattcaaacaaacaacaaacaacgttagctagct----agctgtttgtcgcttctgccacca |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34728399 |
tggaagttggaacgctgctttgtccattcaaacaaacaacaaacaacgttagctagctagctagctgtttgtcgcttctgccacca |
34728314 |
T |
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