View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18624_low_13 (Length: 355)

Name: NF18624_low_13
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18624_low_13
NF18624_low_13
[»] chr6 (4 HSPs)
chr6 (72-333)||(380132-380396)
chr6 (1-332)||(6300115-6300446)
chr6 (1-332)||(6306925-6307256)
chr6 (1-85)||(382140-382224)
[»] chr8 (1 HSPs)
chr8 (3-80)||(30035336-30035413)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 72 - 333
Target Start/End: Complemental strand, 380396 - 380132
Alignment:
Q  72 gataaccataagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagc 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||    
T  380396 gataaccatgagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaaccttacctcttttagcatttgtgatcacgttcatcattgaagc 380297  T
Q  172 ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  380296 ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca 380197  T
Q  272 cctcttccaacaaacaattctacaaactcgttagcag--actgtg-aaaaagggtacacctgctc 333  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  380196 cctcttccaacaaacaattctacaaactcgttagcagatactgtgaaaaaagggtacacctgctc 380132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 6300446 - 6300115
Alignment:
Q  1 cagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcatttgttgct 100  Q
    ||||||||  ||| |||| | |||||| |||||| |||| |||||| | ||| |||||||  || |||||||||||| || |||| ||| | ||||||||    
T  6300446 cagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaattgttgct 6300347  T
Q  101 aggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaaccgcatca 200  Q
    || |||||||||||||| ||||||| || |||||||  |||||||||||   || ||||| |||||||||| ||||||||||||||  ||||||||||||    
T  6300346 agaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaaccgcatca 6300250  T
Q  201 agttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattctacaaact 299  Q
    ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6300249 agttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttctacaaact 6300150  T
Q  300 cgttagcag--actgtgaaaaagggtacacctgct 332  Q
    |  ||||||  ||||||||||||||||||||||||    
T  6300149 cactagcagatactgtgaaaaagggtacacctgct 6300115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 6307256 - 6306925
Alignment:
Q  1 cagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcatttgttgct 100  Q
    ||||||||  ||| |||| | |||||| |||||| |||| |||||| | ||| |||||||  || |||||||||||| || |||| ||| | ||||||||    
T  6307256 cagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaattgttgct 6307157  T
Q  101 aggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaaccgcatca 200  Q
    || |||||||||||||| ||||||| || |||||||  |||||||||||   || ||||| |||||||||| ||||||||||||||  ||||||||||||    
T  6307156 agaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaaccgcatca 6307060  T
Q  201 agttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattctacaaact 299  Q
    ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6307059 agttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttctacaaact 6306960  T
Q  300 cgttagcag--actgtgaaaaagggtacacctgct 332  Q
    |  ||||||  ||||||||||||||||||||||||    
T  6306959 cactagcagatactgtgaaaaagggtacacctgct 6306925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 382224 - 382140
Alignment:
Q  1 cagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagtt 85  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  382224 cagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagtt 382140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
Q  3 gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat 80  Q
    ||||||||||| |||| |||||| || ||||| ||||  ||||| | |||||||| ||| ||||||| ||||||||||    
T  30035413 gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat 30035336  T

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