View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_16 (Length: 291)
Name: NF18624_low_16
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 21592600 - 21592879
Alignment:
| Q |
1 |
tgttcttcacccaagtcagatttatttgctatttcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgc |
100 |
Q |
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| T |
21592600 |
tgttcttcacccaagtcagatttatttgctatttcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgt |
21592699 |
T |
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| Q |
101 |
gtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttc |
200 |
Q |
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| T |
21592700 |
gtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttc |
21592799 |
T |
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| Q |
201 |
ttccctttgaggagcatcttcccattcccatcggcgattgtgcaagtcatatctgttaggctttctccttgaaccttcat |
280 |
Q |
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| T |
21592800 |
ttccctttgaggagcatcttcccattcccatcggcgattgtgcaagtcatatctgttaggctttctccttgaaccttcat |
21592879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 42095259 - 42095134
Alignment:
| Q |
43 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaa |
142 |
Q |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagatttgactgaagagccggaagctcgtattggaacaggagacggagaaa |
42095160 |
T |
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| Q |
143 |
catgatccaaaggagaaagtgaatta |
168 |
Q |
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|||| ||| |||||||| |||||||| |
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| T |
42095159 |
catggtcccaaggagaaggtgaatta |
42095134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42095410 - 42095371
Alignment:
| Q |
1 |
tgttcttcacccaagtcagatttatttgctatttcctcct |
40 |
Q |
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| T |
42095410 |
tgttcttcacccaagtcagatttatctgctatttcctcct |
42095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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