View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_17 (Length: 290)
Name: NF18624_low_17
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 11412458 - 11412730
Alignment:
| Q |
3 |
aacaaaattgaaaaagtgaaaagttgttataccttcacacagatcttgcgatcgctttggggtattttgaaatgtttgaccctcttctttatgatcttct |
102 |
Q |
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| T |
11412458 |
aacagaattgaaaaagtgaaaagctattataccttcacacagatcttgcgatcgctttggggtcttttgaaatgtttgaccctcttctttatgatcttct |
11412557 |
T |
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| Q |
103 |
tggagagaagtggcacatccattgttgatgagctgctgtgaagtgaggagttacgtgacaatatatataagcatcatgtctagggtttgttacttgaata |
202 |
Q |
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| T |
11412558 |
tggtgagaagtggcacatccattgttgatgagctgctatgaagtgaggagttacgtg--aatatatataaacatcgtatctagggtttgttacctgaaca |
11412655 |
T |
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| Q |
203 |
atagtgcactgtattaaagtcgctatcaaaaactgtaatttattgtgattaaaacccttaaccatattcaaattg |
277 |
Q |
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| T |
11412656 |
atagtgcactatattaaagtcgctatgaaaaactgtaatttattgtgattaaaacccttaaccatattcagattg |
11412730 |
T |
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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 35544758 - 35544627
Alignment:
| Q |
8 |
aattgaaaaagtgaaaag---ttgttataccttcacacagatcttgcgatcgctttggggtattttgaaatgtttgaccctcttctttatgatcttcttg |
104 |
Q |
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|||||||||||| ||||| || ||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||| | |||||||||| |
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| T |
35544758 |
aattgaaaaagttaaaagctattattatacctttacacagatcttgcgatcactttggggtctcttgaaatgtttgaccctcttcttcacgatcttcttg |
35544659 |
T |
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| Q |
105 |
gagagaagtggcacatccattgttgatgagct |
136 |
Q |
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| T |
35544658 |
gttagaagaggcacagccattgttgctgagct |
35544627 |
T |
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